Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 245 a.a., tRNA pseudouridine synthase A from Xanthobacter sp. DMC5

 Score = 53.9 bits (128), Expect = 3e-12
 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 34/247 (13%)

Query: 2   YIFKIAYDGK--LSFQTQPHGETVCDKISNALLD-CGYLDNKDRVPLYHGGRTDRGVAAL 58
           Y   I YDG     +Q Q    TV   ++ A    CG     ++V +   GRTD GV A 
Sbjct: 4   YKLTIEYDGTPFAGWQMQADLPTVQGVLAEAFQRFCG-----EKVTVAGAGRTDAGVHAT 58

Query: 59  GNYVVYEMDKK----PVLPRVQSKLKWDGIWVLGCKKI----EIFPEIEHRHYQYTLPNK 110
           G     ++ K+     V   + ++L+   + VL  +++    +       RHY Y + N+
Sbjct: 59  GQVAHVDLAKEWRTDTVRDAMTAQLRPHPVAVLSAERVPDSFDARFSATKRHYLYRIVNR 118

Query: 111 NHDV----------------ELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154
             D+                E M  A+++L+G H F    +  + +   PV+TL  + +S
Sbjct: 119 RPDLALDRDRAWRIPQKLDAEAMHAAAQRLLGKHDFSTF-RAAECQAASPVKTLDQLDVS 177

Query: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPSPAE 214
            +   I +     SFL + VR ++  L  +G+ +    +    L  ++  + G P +PA 
Sbjct: 178 RHGDEIRVVTSARSFLHHQVRSMVGSLMRVGEGRWSADDLAAALAAADRTRCG-PMAPAA 236

Query: 215 GLILVDV 221
           GL L  V
Sbjct: 237 GLYLAAV 243