Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 274 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 51/242 (21%)

Query: 22  TVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALGNYVVYEMDKKPVLPRVQSKLKW 81
           TV + + NAL           V L   GRTD GV A G  V ++        + +  +K 
Sbjct: 32  TVQETLENALSKVA----DSPVSLMCAGRTDAGVHACGQVVHFDT-------QAERSMK- 79

Query: 82  DGIWVLGCKK----------IEIFPEIEH-------RHYQYTLPNK-------------N 111
              WV+G              ++ P   H       R Y+Y + N              N
Sbjct: 80  --AWVMGANINLPHDVSVTWAKVMPAHFHARFKAIARRYRYVIYNDQIRPAHLNEEITWN 137

Query: 112 H---DVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKISSNDYFITIDIFGES 168
           H   D E M +A++ L+G H F    +  + + K P++ ++ ++++ +   I +DI   +
Sbjct: 138 HRPLDAERMAEAAQHLVGVHDFSAF-RAGQCQAKSPIKEVHHLRVTRHGKMIVLDIRAGA 196

Query: 169 FLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKK-GYPPSPAEGLILVDVKTNIDI 227
           FL +MVR I  +L  IG    E P ++ + +L    ++ G   +   GL LVDV+   + 
Sbjct: 197 FLHHMVRNIAGVLMTIGTG--ERPVEWAKEVLESRVRRTGGVTAHPFGLYLVDVEYRDEF 254

Query: 228 DL 229
           +L
Sbjct: 255 EL 256