Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 276 a.a., tRNA pseudouridine(38-40) synthase TruA from Dickeya dadantii 3937

 Score = 53.1 bits (126), Expect = 6e-12
 Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 47/249 (18%)

Query: 6   IAYDGKLSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALGNYVVYE 65
           I YDG   +  Q   E   D +   L         +R+ ++  GRTD GV A G  V + 
Sbjct: 19  IEYDGSRYYGWQRQAEV--DSVQGCLEAALSQVANERIDVFCAGRTDAGVHATGQVVHFT 76

Query: 66  MDKKPVLPRVQSKLKWDGIWVLGCKK----------IEIFPEIEH-------RHYQYTLP 108
                   R   K   D  W +G             ++   +  H       R Y+Y + 
Sbjct: 77  T-------RAARK---DAAWTMGVNANLPPDIAVRWVKTVDDAFHARFSATARRYRYVIY 126

Query: 109 NKNH----------------DVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIK 152
           N+                  D E M +A + L+G + F +  +  + + + P R L  ++
Sbjct: 127 NRRFRPAILSRGVTHYYLPLDAERMHRAGQCLLGENDFTSF-RAVQCQSRTPWRNLMHLR 185

Query: 153 ISSNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPSP 212
           ++    ++ +DI   +F+ +MVR I+  L +IG    ++     EL+ ++D       + 
Sbjct: 186 VARQGDYVVVDIKANAFVHHMVRNIVGSLMEIGCGN-QSENWMAELLAAKDRTLAAATAK 244

Query: 213 AEGLILVDV 221
           A+GL LV V
Sbjct: 245 ADGLYLVSV 253