Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 270 a.a., tRNA pseudouridine(38-40) synthase from Escherichia coli BL21

 Score = 63.9 bits (154), Expect = 3e-15
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 57/259 (22%)

Query: 3   IFKIA----YDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVA 56
           ++KIA    YDG     +Q Q    +V +K+  AL         + + ++  GRTD GV 
Sbjct: 9   VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA----NEPITVFCAGRTDAGVH 64

Query: 57  ALGNYVVYEMDKKPVLPRVQSKLKWDGIWVLGCKK----------IEIFPEIEH------ 100
             G  V +E           + L+ D  W LG             ++  P+  H      
Sbjct: 65  GTGQVVHFET----------TALRKDAAWTLGVNANLPGDIAVRWVKAVPDDFHARFSAT 114

Query: 101 -RHYQYTLPNKNH----------------DVELMKKASEKLIGTHYFQNLSKRDKTKVKD 143
            R Y+Y + N                   D E M +A++ L+G + F +  +  + + + 
Sbjct: 115 ARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRT 173

Query: 144 PVRTLYDIKISSNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFI-ELILSE 202
           P R +  I ++ +  ++ +DI   +F+ +MVR I+  L ++G H    PE +I EL+ ++
Sbjct: 174 PWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAH--NQPESWIAELLAAK 231

Query: 203 DYKKGYPPSPAEGLILVDV 221
           D       + AEGL LV V
Sbjct: 232 DRTLAAATAKAEGLYLVAV 250