Pairwise Alignments

Query, 262 a.a., tRNA pseudouridine(38-40) synthase TruA from Methanococcus maripaludis S2

Subject, 263 a.a., tRNA pseudouridine synthase A from Alteromonas macleodii MIT1002

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 43/247 (17%)

Query: 6   IAYDGKLSF--QTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALGNYVV 63
           I YDG   +  Q Q    +V + +  AL           + +   GRTD GV A G  V 
Sbjct: 8   IEYDGAAVYGWQRQREVPSVQEHLEKALSTVA----NQPIEVQCAGRTDAGVHATGQVVH 63

Query: 64  YEMDKKPVLPRVQSKLKW---------DGIWVLGCKKIE----IFPEIEHRHYQYTLPN- 109
           +  D     PR  S+  W         + + V   K +           HR Y+Y + N 
Sbjct: 64  FNCDA----PR--SERAWTLGVNANLPNSVAVTWAKNVSDDFHARFSATHRRYRYVIHNA 117

Query: 110 ---------------KNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154
                          +  D + M  A++ L+G   F +  +    + K P R + D+ + 
Sbjct: 118 KMRPAILHSGVTHIHRELDEKKMHVAAQALLGEQDFTSF-RAALCQSKTPFRNVTDVSVY 176

Query: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPSPAE 214
               ++ IDI   +FL +MVR I   L +IG  + ++      L+  +D  K    +   
Sbjct: 177 RQGRYVIIDIRANAFLHHMVRNITGALVEIGAGE-QDVNWIAHLLSLKDRSKSAATAKPN 235

Query: 215 GLILVDV 221
           GL LVDV
Sbjct: 236 GLYLVDV 242