Pairwise Alignments

Query, 380 a.a., ABC transporter ATP-binding protein from Methanococcus maripaludis S2

Subject, 359 a.a., ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  188 bits (478), Expect = 2e-52
 Identities = 116/315 (36%), Positives = 174/315 (55%), Gaps = 16/315 (5%)

Query: 33  IDSGSIIVLFGRSGSGKTSTLGCIAGLLDPDNGRIIVNNEIYYDSDKNINMSPQERNLGY 92
           I+ G  + L G SG GKT+ L  + G+   D+G+I++  +          + P  R  G 
Sbjct: 29  IEPGEFVCLLGPSGCGKTTLLRIVCGIERADSGQILLGGQDI------AGLPPAARGFGV 82

Query: 93  VFQNYALFPHLTVKENIEYGIKHLSEEEKE--RRVFELLKLTQIEGLENRYPDQISGGQK 150
           VFQ+YALFP+LT  +NI YG+       +E  +R  E+L L  +    ++YP Q+SGGQ+
Sbjct: 83  VFQSYALFPNLTAAQNIAYGLHPTGALAREMAKRSREMLDLVGLAAHADKYPVQLSGGQQ 142

Query: 151 QRVALARALAPSPKILLLDEPFSALDMISRMRLRESLRSIQKELKIPVVFVTHSFEEAFV 210
           QRVALARALAP+P++LLLDEP SALD   R  LR  +R++QK L I  + VTH  EEA  
Sbjct: 143 QRVALARALAPNPRLLLLDEPLSALDAQVRASLRSEIRALQKRLGIVTIMVTHDQEEALS 202

Query: 211 MAEKVVTFHNGRIQQIGTPEEIFYNPINTNVAQLVGYINIFSNAEIDYNENSPDFSILDY 270
           MA++VV  HNGRI+Q GTP+E++  P    VA  VG +N+     +   +       +  
Sbjct: 203 MADRVVLMHNGRIEQAGTPDELYRQPRTRFVAGFVGRMNMLPATVLADGK-------VRV 255

Query: 271 RDMKMSIKKFNKSM-NEVSFGIRPENIKLIDINSEKTENVFECIIKDVVNEGSTSLVYLE 329
           RD ++     N S+ ++ + GIRPE++ +    +E   N F   + D    G+ +   L 
Sbjct: 256 RDSELFCAPGNLSVGSQATVGIRPEHVVVKRYGTELGANSFAARLLDTEFFGNRTSARLA 315

Query: 330 VIQNGLRLMSKTQND 344
               G+ + ++   D
Sbjct: 316 CEPLGIEIEAELPAD 330