Pairwise Alignments

Query, 353 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 350 a.a., Possible ABC-transport protein, periplasmic-binding component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 90/336 (26%), Positives = 145/336 (43%), Gaps = 42/336 (12%)

Query: 38  TDFTGETSTINSPVERVVSNYGLIPPIIYLFGEGDKIVAGRGVMG-----ADEFIDAVDP 92
           TD  G   T+   V+RVV        ++      DKIV   GVM        +    + P
Sbjct: 28  TDQIGRQVTVPDTVDRVVVLQHQTLNLLVQMNATDKIV---GVMANWKQQLGDGYARLAP 84

Query: 93  EFKTRSK--DIKSDNVEEIKSLNPDVIFAPSWGSQQGQYPQLKSLGIPVVFI-------- 142
           E   ++   D+   + E++ +L P V+F  ++  Q+    ++  LGIPVV I        
Sbjct: 85  ELAQKASLGDLTHVDPEKLVALRPQVVFVTNYAPQE-MIDKISRLGIPVVAISLRHDIAG 143

Query: 143 ----------DIETASN--YYKTIEMMGEVFQKEAYAQELIDYYNQSTNDVLKRTASISE 190
                     D E A N    + I ++G++  K   A+ LI+  ++    V  R  S+ E
Sbjct: 144 EQAKMNPTLADEEQAYNRGLREGITLIGDIVNKPQEAKALIEAMDKGRKMVSDRLQSVPE 203

Query: 191 NEKPRVLFLVYDQRKNSYWTPGGEFYQNNLITMAGGKTVSSDLPTGKAQINVEQAASWNP 250
           NE+ R              T G   Y   ++  AG   V++    G  Q+ +EQ  +W+P
Sbjct: 204 NERVRAYMA-----NPELTTYGSGKYTGLMMAHAGALNVAASSVKGFKQVTMEQVIAWDP 258

Query: 251 DVIITSAHTMEYPSTKVKEDVLTDEGWKEINAVKSGNVYAMPFDGESWDTLGSKYV-LGL 309
            VI        YP  KV  ++L +  W+ I+AVK   VY MP   ++W     + V +G 
Sbjct: 259 QVIFVQNR---YP--KVVNEILHNPQWQVIDAVKHHRVYLMPDYAKAWGYPMPEAVGIGE 313

Query: 310 YWTAKTLHPDMYTDVDILNLTSSEYERFFNVSIDEV 345
            W AK L+P+ + D+D+    +  Y+RF+      V
Sbjct: 314 LWMAKKLYPEKFHDIDMQKAANDWYQRFYRTDYQGV 349