Pairwise Alignments

Query, 353 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 377 a.a., ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 85/338 (25%), Positives = 149/338 (44%), Gaps = 63/338 (18%)

Query: 35  VSVTDFTGETSTINSPVERVVSNYGLIPPIIYLFGEGDKIVAGRGVMGADEFIDAVDPE- 93
           V+V D TG    +N PV  V+   G     IY     DK    + V+G  + +   DPE 
Sbjct: 27  VTVKDVTGRDVEVNVPVSHVILGEGRQ---IYFLAALDKENPFQHVVGWRDDLAKADPET 83

Query: 94  ---FKTRSKDIK-----------SDNVEEIKSLNPDVIF----APSWGSQQGQYPQLKSL 135
              +  +  DI            + ++E+  SL PDVI     A +   + G   +L+ +
Sbjct: 84  YAAYLAKYPDIAKLPTFGGMKDGTFDIEQAISLKPDVILMNIDAKTATQEAGYIEKLEKV 143

Query: 136 GIPVVFIDI--ETASNYYKTIEMMGEVFQKEAYAQELIDYYNQSTNDVLKRTASISE-NE 192
           GIP+V++D   +   N   ++ +MG++  KE  A++ I +   S   + K T ++ + N 
Sbjct: 144 GIPLVYVDFREKPMENTEPSMRLMGKLTGKEKIAEDFIKFRADS---IAKVTDTLEKANP 200

Query: 193 KPRVLFLVYDQRKNSY-----WTPGGEFYQNNLITMAGGKTVSSDLPTGK-AQINVEQAA 246
           K  V+F+   +R   Y      + G E +   ++ +AGG  ++ D+  G    +N EQ  
Sbjct: 201 KKPVVFV---ERAGGYSDDCCMSFGNENF-GKMVELAGGINMAKDIIPGTFGNVNPEQII 256

Query: 247 SWNPD-VIITSAHTMEY----------------PSTKVKEDVLTDEGWKEINAVKSGNVY 289
           + NP+ +IIT  +   Y                 + +  E++     +  + AVK GNV+
Sbjct: 257 ASNPEQIIITGGNWNGYVPGGNWVGVGYGADLKEAHRKLENLTKRPAFTGVQAVKDGNVH 316

Query: 290 AMPFDGESWDTLGSK--YVLGLYWTAKTLHPDMYTDVD 325
           A+      W    +     + +   AK LHPD++ D+D
Sbjct: 317 AI------WHQFYNNPYQFVAIQEIAKWLHPDLFKDLD 348