Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 638 a.a., Cell division-associated, ATP-dependent zinc metalloprotease FtsH from Variovorax sp. SCN45

 Score =  209 bits (533), Expect = 3e-58
 Identities = 106/247 (42%), Positives = 165/247 (66%), Gaps = 4/247 (1%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + ++DV G ++ K++++E V++ +K+ + F+++G R P+G+LL GPPGTGKTLLAK++A 
Sbjct: 158 VTFADVAGCDEAKEEVREVVDF-LKDPQRFQKLGGRIPRGLLLVGPPGTGKTLLAKSIAG 216

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E++  F S+ G +    +VG     +R++F  A++ AP +IF DEID+V  +RG   G  
Sbjct: 217 EAKVPFFSISGSDFVEMFVGVGAARVRDMFENAKKNAPCIIFIDEIDAVGRQRGAGLGGG 276

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQ+L E+DG E    V+++AATNRPDILD ALLRPGR DR V V +P+   R
Sbjct: 277 NDEREQTLNQMLVEMDGFETNLGVIVVAATNRPDILDAALLRPGRFDRQVYVTLPDIRGR 336

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
            +I  VH + +P+G+DVN   +A+ T G +GAD+  +C EAA++A R   N+  VE + F
Sbjct: 337 EQILGVHMRKVPLGQDVNPSVIARGTPGMSGADLANLCNEAALMAARR--NARVVEMQDF 394

Query: 743 DGAFKRI 749
           + A  +I
Sbjct: 395 EKAKDKI 401



 Score =  175 bits (444), Expect = 6e-48
 Identities = 89/200 (44%), Positives = 132/200 (66%), Gaps = 4/200 (2%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           VT+ D+ G  E  +++RE+V+  ++ P+ F KLG   P+G+LL GPPGTGKTLLAK++A 
Sbjct: 158 VTFADVAGCDEAKEEVREVVDF-LKDPQRFQKLGGRIPRGLLLVGPPGTGKTLLAKSIAG 216

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EA   F++I+G + +  +VG     +R +FE A++N+P IIFIDEIDAV  +R    G  
Sbjct: 217 EAKVPFFSISGSDFVEMFVGVGAARVRDMFENAKKNAPCIIFIDEIDAVGRQRGAGLGGG 276

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + Q+L  MDG E+   ++++AATNRPD +D AL RPGR DR++ + +PD  GR
Sbjct: 277 NDEREQTLNQMLVEMDGFETNLGVIVVAATNRPDILDAALLRPGRFDRQVYVTLPDIRGR 336

Query: 351 NEILQIHTRNMPLQPDYEKS 370
            +IL +H R +PL  D   S
Sbjct: 337 EQILGVHMRKVPLGQDVNPS 356