Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

 Score =  650 bits (1677), Expect = 0.0
 Identities = 351/791 (44%), Positives = 492/791 (62%), Gaps = 80/791 (10%)

Query: 4   LMVAEAYQGDVGKGIVRIDPLTMEKLSLKAGDAIEIAGKEKTYATVWRGYLEDQGKGIIR 63
           + VA A   D G+G+ R+    M +L L  GD +EI GK  T A V R Y ED+G  ++R
Sbjct: 13  IQVANARPEDAGRGLARLPLTVMAELQLAEGDVVEIVGKRSTPARVVRPYKEDEGLDVLR 72

Query: 64  MDGILRQNTKAGIGDKVKITVVEVKEAKKITLAPMQAVRFSTGFESYVGSRLVEQVVDKG 123
           +DG+ R N   G GD V++  ++ + A+++  AP Q      G    +     ++ +  G
Sbjct: 73  LDGLQRANAGVGSGDFVQLRKIDPRPAQRVVFAPAQNNLRLQGNPDALKRVFFQRPLVAG 132

Query: 124 SKVVIGVLGTAFP----------------------FIVTGTTPKGPVKINEYTQIELKTE 161
             V         P                       IV  T PKG V I+  T++EL+ E
Sbjct: 133 DVVATAGQQQVPPGDMPPHLRQMLAAPAYALQEIRLIVVSTVPKGIVHIDAETEVELRAE 192

Query: 162 PVTELKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPG 221
              E +E++  +VTY+D+GG+ E + ++REMVELP+RYPELF++LG++PPKGV+L GPPG
Sbjct: 193 -YEEPRESRRADVTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPG 251

Query: 222 TGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDA 281
           TGKT LA+AVANE+ A F+ INGPEIM    GE+E+ LR IFEEA + +PSI+FIDEID+
Sbjct: 252 TGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDS 311

Query: 282 VAPKRDEASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREIT 341
           +APKR + +GE E+R+VAQLLTLMDGLE R  LV++AATNRP++ID ALRRP        
Sbjct: 312 IAPKRGQVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRP-------- 363

Query: 342 IGIPDRHGRNEILQIHTRNMPLQPDYEKSDVISILNELVGEYDRSKIESLVKLVEKASSE 401
                                                  G +DR   E +V + ++    
Sbjct: 364 ---------------------------------------GRFDR---EIVVGVPDERGRR 381

Query: 402 EEIEKILKDGEVEDKVKVKLNQLMVKELADKTHGFAGADLAALSKEAAMKTLRRFLPDID 461
           E +    +   + D+V +        ELA  T+GF GADLAAL++EAA++T+RR +P ++
Sbjct: 382 EILGIHTRGMPLGDRVDLA-------ELARMTYGFVGADLAALTREAAIETVRRLMPRLN 434

Query: 462 LEKEEIPREVLDKIKVTKEDFVGGLKEVEPSALREVLVEVPNIKWSDVGGLEDIKQDLKE 521
           LE+  IP +VL+ + VT+EDF+  +K V+PSA+REV+V+ PNI W+D+GGL+D +  LKE
Sbjct: 435 LEEGTIPPDVLEDLSVTREDFLSAIKRVQPSAMREVMVQAPNIGWADIGGLDDAQMRLKE 494

Query: 522 AVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKW 581
            VE P+K+ + F R+GIRP KG LL+GPPGTGKTLLAKAVA E++ANFI+ K  ++ SKW
Sbjct: 495 GVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIATKSSDLLSKW 554

Query: 582 VGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSSGVTEKVVNQLLTELDGLE 641
            GESE+ I  +F +ARQ APTVIF DE+DS+ P RG   G   VTE+VVN +L E+DGLE
Sbjct: 555 YGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPAVTERVVNTILAEMDGLE 614

Query: 642 EPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNL 701
           E + VV+I ATNRP ++D ALLRPGR D ++ VP+P++  R  I  +HTK MP+  DV+L
Sbjct: 615 ELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRILAIHTKKMPLASDVDL 674

Query: 702 EKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHFDGAFKRIAPSVKDDDMDEY 761
           ++LA  T+ +TGAD+E + R A +IALR+++  E V   HF+ A +    SV  +   EY
Sbjct: 675 DQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEAALEETRASVTPEMEREY 734

Query: 762 KDLAKEYGQNA 772
           + +     Q+A
Sbjct: 735 EQIQATLKQSA 745