Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 637 a.a., integral membrane ATP-dependent zinc metallopeptidase from Pseudomonas putida KT2440

 Score =  204 bits (519), Expect = 1e-56
 Identities = 115/282 (40%), Positives = 172/282 (60%), Gaps = 20/282 (7%)

Query: 507 SDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANESE 566
           +DV G ++ K+++ E VE+ +++   F+R+G R P+GVL+ GPPGTGKTLLAKA+A E++
Sbjct: 157 ADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKTLLAKAIAGEAK 215

Query: 567 ANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-GV 625
             F ++ G +    +VG     +R++F +A++ AP +IF DEID+V   RG   G     
Sbjct: 216 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGMGGGHDE 275

Query: 626 TEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEI 685
            E+ +NQLL E+DG E    +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +I
Sbjct: 276 REQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGREQI 335

Query: 686 FKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHFDGA 745
            KVH + +PIG++VN   +A+ T G++GAD+  +  EA++ A R   N   VE + F+ A
Sbjct: 336 LKVHMRKVPIGENVNPAVIARGTPGFSGADLANLVNEASLFAARS--NKRLVEMKEFELA 393

Query: 746 FKRIAPSVKDDDMDEYKDLAKEYGQNAGVSEIEKGPENTGYH 787
             +I    +   M               +SE EK   NT YH
Sbjct: 394 KDKIMMGAERKTM--------------VMSEKEK--RNTAYH 419



 Score =  179 bits (453), Expect = 5e-49
 Identities = 104/262 (39%), Positives = 153/262 (58%), Gaps = 21/262 (8%)

Query: 166 LKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKT 225
           L E +V   T  D+ G  E  +++ E+VE  +R P  F +LG   P+GVL+ GPPGTGKT
Sbjct: 147 LSEDQV-KTTLADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKT 204

Query: 226 LLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPK 285
           LLAKA+A EA   F+TI+G + +  +VG     +R +FE+A++++P IIFIDEIDAV   
Sbjct: 205 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRH 264

Query: 286 RDEASG---EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITI 342
           R    G   +   + + QLL  MDG E    ++++AATNRPD +D AL RPGR DR++ +
Sbjct: 265 RGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVV 324

Query: 343 GIPDRHGRNEILQIHTRNMPL------------QPDYEKSDVISILNELVGEYDRSKIES 390
           G+PD  GR +IL++H R +P+             P +  +D+ +++NE      RS    
Sbjct: 325 GLPDIRGREQILKVHMRKVPIGENVNPAVIARGTPGFSGADLANLVNEASLFAARSN--- 381

Query: 391 LVKLVEKASSEEEIEKILKDGE 412
             +LVE    E   +KI+   E
Sbjct: 382 -KRLVEMKEFELAKDKIMMGAE 402