Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 641 a.a., ATP-dependent metalloprotease FtsH from Kangiella aquimarina DSM 16071

 Score =  204 bits (520), Expect = 9e-57
 Identities = 105/249 (42%), Positives = 161/249 (64%), Gaps = 2/249 (0%)

Query: 484 GGLKEVEPSALREVLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKG 543
           GG      S  R +  +     ++DV G+E+ K+++ E V++ +++   F+R+G + P+G
Sbjct: 136 GGALSFGKSKARMLSEDQVKTTFADVAGVEEAKEEVGELVDF-LRDPRKFQRLGGKIPRG 194

Query: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603
           VL+ GPPGTGKTLLA+A+A E++  F ++ G +    +VG     +R++F +A++ AP +
Sbjct: 195 VLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCI 254

Query: 604 IFFDEIDSVAPKRGMDFGSS-GVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQAL 662
           IF DEID+V   RG   G      E+ +NQLL E+DG E  + V++IAATNRPD+LD AL
Sbjct: 255 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGGEGVIVIAATNRPDVLDPAL 314

Query: 663 LRPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCRE 722
           LRPGR DR V+V +P+   R +I KVH + +PIG DV    +A+ T G++GAD+  +  E
Sbjct: 315 LRPGRFDRQVVVGLPDIKGREQILKVHMRKVPIGDDVEPGVIARGTPGFSGADLANLVNE 374

Query: 723 AAMIALREN 731
           AA+ A R+N
Sbjct: 375 AALFAARDN 383



 Score =  179 bits (455), Expect = 3e-49
 Identities = 140/476 (29%), Positives = 233/476 (48%), Gaps = 45/476 (9%)

Query: 166 LKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKT 225
           L E +V   T+ D+ G++E  +++ E+V+  +R P  F +LG + P+GVL+ GPPGTGKT
Sbjct: 149 LSEDQV-KTTFADVAGVEEAKEEVGELVDF-LRDPRKFQRLGGKIPRGVLMVGPPGTGKT 206

Query: 226 LLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPK 285
           LLA+A+A EA   F+TI+G + +  +VG     +R +FE+A++++P IIFIDEIDAV   
Sbjct: 207 LLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRH 266

Query: 286 RDEASG---EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITI 342
           R    G   +   + + QLL  MDG E    ++++AATNRPD +D AL RPGR DR++ +
Sbjct: 267 RGAGLGGGHDEREQTLNQLLVEMDGFEGGEGVIVIAATNRPDVLDPALLRPGRFDRQVVV 326

Query: 343 GIPDRHGRNEILQIHTRNMPL------------QPDYEKSDVISILNE--LVGEYDRSKI 388
           G+PD  GR +IL++H R +P+             P +  +D+ +++NE  L    D  +I
Sbjct: 327 GLPDIKGREQILKVHMRKVPIGDDVEPGVIARGTPGFSGADLANLVNEAALFAARDNQRI 386

Query: 389 ESLVKLVEKASSEEEIEKILKDGEVEDKVKVKLNQLMVKELADKTHGFAGADLAALSKEA 448
             + +  EKA      +KIL   E    V  +  +L     A    G A   L   S + 
Sbjct: 387 VGMEQF-EKAK-----DKILMGTERRSMVMTEEEKL---NTAYHEAGHAIVGLKVPSHDP 437

Query: 449 AMKTLRRFLPDIDLEKEEIPREVLDKIKVTKEDFVGGLKEVEPSALREVLVEVPNIKWSD 508
             K     +P        +     DK  ++KE     L  +    + E ++  P+     
Sbjct: 438 VYKV--SIIPRGRALGVTMYLPEQDKYSLSKEALESQLSSLFGGRIAEEILNGPD--KVT 493

Query: 509 VGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVA-----N 563
            G   DI++    A       + M  + G+    G L +     G+  L ++V      +
Sbjct: 494 TGASNDIERATSLA-------RNMVTKWGLSDKLGPLSYA-EDEGEVFLGRSVTQHKNIS 545

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMD 619
           +  A  I  +  +I  +    ++  +++   K    A  ++ ++ ID+   K+ MD
Sbjct: 546 DETARAIDAEIRDIIDRNYNRAKTILQDNMDKLHAMADALMKYETIDANQIKQIMD 601