Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 650 a.a., ATP-dependent zinc metalloprotease FtsH from Dickeya dianthicola ME23

 Score =  204 bits (518), Expect = 2e-56
 Identities = 107/283 (37%), Positives = 171/283 (60%), Gaps = 20/283 (7%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           ++DV G ++ K+++ E VE+ ++    F+++G + PKGVL+ GPPGTGKTLLAKA+A E+
Sbjct: 154 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 212

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-G 624
           +  F ++ G +    +VG     +R++F +A++AAP +IF DEID+V  +RG   G    
Sbjct: 213 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 272

Query: 625 VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLE 684
             E+ +NQ+L E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +
Sbjct: 273 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 332

Query: 685 IFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHFDG 744
           I KVH + +P+  D++   +A+ T G++GAD+  +  EAA+ A R N             
Sbjct: 333 ILKVHMRRVPLSPDIDASVIARGTPGFSGADLANLVNEAALFAARGN------------- 379

Query: 745 AFKRIAPSVKDDDMDEYKDLAKEYGQNAGVSEIEKGPENTGYH 787
             +R+   V   + ++ KD      +   +   E   E+T YH
Sbjct: 380 --RRVVSMV---EFEKAKDKIMMGAERRSMVMTEAQKESTAYH 417



 Score =  186 bits (473), Expect = 3e-51
 Identities = 93/199 (46%), Positives = 133/199 (66%), Gaps = 4/199 (2%)

Query: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234
           T+ D+ G  E  +++ E+VE  +R P  F KLG + PKGVL+ GPPGTGKTLLAKA+A E
Sbjct: 153 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG--- 291
           A   F+TI+G + +  +VG     +R +FE+A++ +P IIFIDEIDAV  +R    G   
Sbjct: 212 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 271

Query: 292 EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRN 351
           +   + + Q+L  MDG E    ++++AATNRPD +D AL RPGR DR++ +G+PD  GR 
Sbjct: 272 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 331

Query: 352 EILQIHTRNMPLQPDYEKS 370
           +IL++H R +PL PD + S
Sbjct: 332 QILKVHMRRVPLSPDIDAS 350