Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 681 a.a., ATP-dependent metalloprotease FtsH from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  203 bits (516), Expect = 3e-56
 Identities = 107/248 (43%), Positives = 156/248 (62%), Gaps = 5/248 (2%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           I + +V GL++ K++++E VE+ +KN   F ++G + PKG LL GPPGTGKTLLAKAVA 
Sbjct: 195 ITFGNVAGLDEAKEEVQEIVEF-LKNPSKFTKLGGKIPKGALLVGPPGTGKTLLAKAVAG 253

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDF--G 621
           E+   F ++ G +    +VG     +R++F++A++ AP +IF DEID++   RG     G
Sbjct: 254 EAGVPFFTLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCIIFIDEIDAIGRSRGKGQMPG 313

Query: 622 SSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETA 681
           S+   E  +N LL E+DG      V+++AATNRPD+LD ALLRPGR DR + +  P+   
Sbjct: 314 SNDERENTLNSLLVEMDGFGTDTGVIVLAATNRPDVLDSALLRPGRFDRQISIDKPDIVG 373

Query: 682 RLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRH 741
           R  IFKVH   +    D++ +KLA +T G+ GA+I  VC EAA+IA R   N   V+ + 
Sbjct: 374 REAIFKVHLAPIKTNSDIDPKKLAAQTPGFAGAEIANVCNEAALIAARR--NKAAVDMQD 431

Query: 742 FDGAFKRI 749
           F  A  R+
Sbjct: 432 FQDAVDRV 439



 Score =  167 bits (422), Expect = 2e-45
 Identities = 113/325 (34%), Positives = 168/325 (51%), Gaps = 73/325 (22%)

Query: 168 ETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLL 227
           E KV  +T+ ++ GL E  ++++E+VE  ++ P  F KLG + PKG LL GPPGTGKTLL
Sbjct: 190 ENKV-KITFGNVAGLDEAKEEVQEIVEF-LKNPSKFTKLGGKIPKGALLVGPPGTGKTLL 247

Query: 228 AKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRD 287
           AKAVA EAG  F+T++G + +  +VG     +R +F++A+E +P IIFIDEIDA+   R 
Sbjct: 248 AKAVAGEAGVPFFTLSGSDFVEMFVGVGAARVRDLFKQAKEKAPCIIFIDEIDAIGRSRG 307

Query: 288 E----ASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIG 343
           +     S +     +  LL  MDG  +   +++LAATNRPD +D AL RPGR DR+I+I 
Sbjct: 308 KGQMPGSNDERENTLNSLLVEMDGFGTDTGVIVLAATNRPDVLDSALLRPGRFDRQISID 367

Query: 344 IPDRHGRNEILQIHTRNMPLQPDYEKSDVISILNELVGEYDRSKIESLVKLVEKASSEEE 403
            PD  GR  I ++H     L P    SD+           D  K+               
Sbjct: 368 KPDIVGREAIFKVH-----LAPIKTNSDI-----------DPKKL--------------- 396

Query: 404 IEKILKDGEVEDKVKVKLNQLMVKELADKTHGFAGADLAALSKEAAMKTLRRFLPDIDLE 463
                                     A +T GFAGA++A +  EAA+   RR    +D++
Sbjct: 397 --------------------------AAQTPGFAGAEIANVCNEAALIAARRNKAAVDMQ 430

Query: 464 KEEIPREVLDKIKVTKEDFVGGLKE 488
             +   + +D++       +GGL++
Sbjct: 431 DFQ---DAVDRV-------IGGLEK 445