Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 644 a.a., protease, ATP-dependent zinc-metallo from Escherichia coli BL21

 Score =  204 bits (519), Expect = 1e-56
 Identities = 108/283 (38%), Positives = 171/283 (60%), Gaps = 20/283 (7%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           ++DV G ++ K+++ E VE+ ++    F+++G + PKGVL+ GPPGTGKTLLAKA+A E+
Sbjct: 151 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 209

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-G 624
           +  F ++ G +    +VG     +R++F +A++AAP +IF DEID+V  +RG   G    
Sbjct: 210 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 269

Query: 625 VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLE 684
             E+ +NQ+L E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +
Sbjct: 270 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 329

Query: 685 IFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHFDG 744
           I KVH + +P+  D++   +A+ T G++GAD+  +  EAA+ A R N             
Sbjct: 330 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN------------- 376

Query: 745 AFKRIAPSVKDDDMDEYKDLAKEYGQNAGVSEIEKGPENTGYH 787
             KR+   V   + ++ KD      +   +   E   E+T YH
Sbjct: 377 --KRVVSMV---EFEKAKDKIMMGAERRSMVMTEAQKESTAYH 414



 Score =  186 bits (471), Expect = 5e-51
 Identities = 101/244 (41%), Positives = 151/244 (61%), Gaps = 19/244 (7%)

Query: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234
           T+ D+ G  E  +++ E+VE  +R P  F KLG + PKGVL+ GPPGTGKTLLAKA+A E
Sbjct: 150 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG--- 291
           A   F+TI+G + +  +VG     +R +FE+A++ +P IIFIDEIDAV  +R    G   
Sbjct: 209 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 268

Query: 292 EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRN 351
           +   + + Q+L  MDG E    ++++AATNRPD +D AL RPGR DR++ +G+PD  GR 
Sbjct: 269 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328

Query: 352 EILQIHTRNMPLQPD------------YEKSDVISILNE--LVGEYDRSKIESLVKLVEK 397
           +IL++H R +PL PD            +  +D+ +++NE  L       ++ S+V+  EK
Sbjct: 329 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF-EK 387

Query: 398 ASSE 401
           A  +
Sbjct: 388 AKDK 391