Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 593 a.a., ATP-dependent zinc metalloprotease FtsH from Azospirillum sp. SherDot2

 Score =  182 bits (462), Expect = 5e-50
 Identities = 95/225 (42%), Positives = 144/225 (64%), Gaps = 2/225 (0%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           ++DV G+++ K++L+E V++ +K+   F   G R PKG+LL GPPGTGKT+LAKA A E+
Sbjct: 153 FADVAGVDEAKEELRETVQF-LKDPRRFAMAGARVPKGILLVGPPGTGKTMLAKAAAGEA 211

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSSGV 625
              F +  G +    +VG     +R +F+ AR  AP ++F DEID++A KRG +  S   
Sbjct: 212 GVPFFAASGSDFVEMFVGLGAARVRSLFKTARANAPCILFIDEIDALAGKRG-ESTSHSE 270

Query: 626 TEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEI 685
            E+ +NQLL E+DG+ E  +VV+IAATNR ++LD A+LRPGR DR + V +P+   R  I
Sbjct: 271 REQTLNQLLVEMDGIVEGGEVVVIAATNRSEMLDPAVLRPGRFDRHIHVSLPDVAGREAI 330

Query: 686 FKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRE 730
             VH   + +  DV    +A+ T G++GA++  +  EAA+ A R+
Sbjct: 331 LGVHAGRLTLAPDVCARTVARGTPGFSGAELANLTNEAALSAARQ 375



 Score =  169 bits (429), Expect = 3e-46
 Identities = 102/274 (37%), Positives = 152/274 (55%), Gaps = 17/274 (6%)

Query: 95  LAPMQAVRFSTGFESYVGSRLVEQVVDKGSKVVIGVLGTAFPFIVTGTTPKGPVKIN-EY 153
           L  M+A + +  F+   G  + + V         GVL  A PF+V      G +    ++
Sbjct: 85  LKEMRAHKVAIAFDEGPGGLMAQTV---------GVLDRAAPFVVVALLIGGLLMSGGQF 135

Query: 154 TQIELKTEPVTELKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKG 213
             +   T    E  +T      + D+ G+ E  +++RE V+  ++ P  F   G   PKG
Sbjct: 136 FGMGRATRVRPEDTKT-----VFADVAGVDEAKEELRETVQF-LKDPRRFAMAGARVPKG 189

Query: 214 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSI 273
           +LL GPPGTGKT+LAKA A EAG  F+  +G + +  +VG     +R +F+ A  N+P I
Sbjct: 190 ILLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEMFVGLGAARVRSLFKTARANAPCI 249

Query: 274 IFIDEIDAVAPKRDEASGEVER-RMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRR 332
           +FIDEIDA+A KR E++   ER + + QLL  MDG+   G++V++AATNR + +D A+ R
Sbjct: 250 LFIDEIDALAGKRGESTSHSEREQTLNQLLVEMDGIVEGGEVVVIAATNRSEMLDPAVLR 309

Query: 333 PGRLDREITIGIPDRHGRNEILQIHTRNMPLQPD 366
           PGR DR I + +PD  GR  IL +H   + L PD
Sbjct: 310 PGRFDRHIHVSLPDVAGREAILGVHAGRLTLAPD 343



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 427 KELADKTHGFAGADLAALSKEAAMKTLRR 455
           + +A  T GF+GA+LA L+ EAA+   R+
Sbjct: 347 RTVARGTPGFSGAELANLTNEAALSAARQ 375