Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 648 a.a., ATP-dependent zinc metalloprotease FtsH from Alteromonas macleodii MIT1002

 Score =  201 bits (512), Expect = 8e-56
 Identities = 98/227 (43%), Positives = 154/227 (67%), Gaps = 2/227 (0%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           ++DV G ++ K+D+ E V++ +++   F+++G + PKGVL+ GPPGTGKTLLAKA+A E+
Sbjct: 155 FADVAGCDEAKEDVSELVDF-LRDPSKFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 213

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-G 624
           +  F ++ G +    +VG     +R++F +A++AAP +IF DEID+V  +RG   G    
Sbjct: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 273

Query: 625 VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLE 684
             E+ +NQ+L E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +
Sbjct: 274 EREQTLNQMLVEMDGFEGHEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGREQ 333

Query: 685 IFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALREN 731
           I KVH + +P+  +V    +A+ T G++GAD+  +  EAA+ A R N
Sbjct: 334 ILKVHIRKVPVADNVEPSVIARGTPGFSGADLANLVNEAALFAARGN 380



 Score =  180 bits (457), Expect = 2e-49
 Identities = 101/254 (39%), Positives = 149/254 (58%), Gaps = 12/254 (4%)

Query: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234
           T+ D+ G  E  + + E+V+  +R P  F KLG + PKGVL+ GPPGTGKTLLAKA+A E
Sbjct: 154 TFADVAGCDEAKEDVSELVDF-LRDPSKFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 212

Query: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG--- 291
           A   F+TI+G + +  +VG     +R +FE+A++ +P IIFIDEIDAV  +R    G   
Sbjct: 213 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 272

Query: 292 EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRN 351
           +   + + Q+L  MDG E    ++++AATNRPD +D AL RPGR DR++ +G+PD  GR 
Sbjct: 273 DEREQTLNQMLVEMDGFEGHEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGRE 332

Query: 352 EILQIHTRNMPLQPDYEKSDVI--------SILNELVGEYDRSKIESLVKLVEKASSEEE 403
           +IL++H R +P+  + E S +         + L  LV E          +LV     E+ 
Sbjct: 333 QILKVHIRKVPVADNVEPSVIARGTPGFSGADLANLVNEAALFAARGNKRLVSMEEFEKA 392

Query: 404 IEKILKDGEVEDKV 417
            +KI+   E +  V
Sbjct: 393 KDKIMMGSERKSMV 406