Pairwise Alignments

Query, 322 a.a., daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein from Methanococcus maripaludis S2

Subject, 578 a.a., ABC transporter multidrug efflux pump, fused ATP-binding domains from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  162 bits (410), Expect = 2e-44
 Identities = 89/220 (40%), Positives = 126/220 (57%), Gaps = 2/220 (0%)

Query: 4   IEVKNLVKKFDTNVAVNNVSFSVNKGEIFAFLGPNGAGKSTTINILTTLLKATSGSAVIS 63
           IE + L KKF    A ++V+F V +GEIF  LGPNGAGKSTT  ++  LL  TSG A++ 
Sbjct: 330 IEAQELTKKFGDFAATDHVNFVVQRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVL 389

Query: 64  GFDASKDPKKVRKTIGIVFQDSTLDNQLTAYENLYIHGKIYGYKGEILKNRIDELLDFVE 123
             D      K R+ +G + Q  +L   LT  +NL     +YG +G     +I  + +   
Sbjct: 390 DMDLKVSSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKIQRMSEAFG 449

Query: 124 LLEFKDKIVRNFSGGMVRRLEIARSLIHEPEILFLDEPTIGLDPQTRSHIWEYIKKMQAK 183
           L             G  +RL +A SL+HEP+ILFLDEPT G+DP TR   W +I  M  K
Sbjct: 450 LKSIASHPTDALPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEK 509

Query: 184 NNMTIFLTTHYMEEAELLADKVAIIDNGKIIAEGTVNELK 223
             +T+ +TTH+M+EAE   D++ ++  GK+IA GT ++LK
Sbjct: 510 -GVTVMVTTHFMDEAE-YCDRIGLVYRGKLIASGTPDDLK 547



 Score =  129 bits (325), Expect = 1e-34
 Identities = 88/308 (28%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 4   IEVKNLVKKFD--TNVAVNNVSFSVNKGEIFAFLGPNGAGKSTTINILTTLLKATSGSAV 61
           I +  L K+F      AV  +  +++ G +   +GP+GAGK+T + +L  LLKA  GSA 
Sbjct: 6   ITLHGLTKRFAGMDKPAVAPLDCTIHSGYVTGLVGPDGAGKTTLMRMLAGLLKADGGSAS 65

Query: 62  ISGFDASKDPKKVRKTIGIVFQDSTLDNQLTAYENLYIHGKIYGYKGEILKNRIDELLDF 121
           + GFD  ++  ++   +G + Q   L   LT  ENL ++  +    GEI +     LL+F
Sbjct: 66  VLGFDPIQNDSELHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEIREKTFARLLEF 125

Query: 122 VELLEFKDKIVRNFSGGMVRRLEIARSLIHEPEILFLDEPTIGLDPQTRSHIWEYIKKMQ 181
             L  F  ++    SGGM ++L +A +L+ EP++L LDEP +G+DP +R  +W+ + ++ 
Sbjct: 126 TALGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHEL- 184

Query: 182 AKNNMTIFLTTHYMEEAELLADKVAIIDNGKIIAEGTVNEL-KKIVGNDCISVKFEEIPK 240
           A + M I  +T Y++EAE   D V +++ G+++ +G    L + + G   +    +E  +
Sbjct: 185 AGDGMLILWSTSYLDEAEQCRD-VLLMNEGELLYQGEPKALTQTMAGRSFLMSSPQENNR 243

Query: 241 NLSFENCELKENGKVIYYTENADLKIPK---IFEFAHENGLKIQEISYKKPNLNDVFIKL 297
            L      L +    +    +  L + K     +     G+    ++   P   D FI L
Sbjct: 244 KLLQRALRLPQVSDGMIQGRSVRLILKKEATAADIRQAEGMPEITLNETAPRFEDAFIDL 303

Query: 298 TGREIRSE 305
            G    SE
Sbjct: 304 LGGAGTSE 311