Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 257 a.a., Inner membrane transport permease YadH from Xanthobacter sp. DMC5

 Score = 84.0 bits (206), Expect = 3e-21
 Identities = 60/252 (23%), Positives = 122/252 (48%), Gaps = 16/252 (6%)

Query: 1   MDAFSAMFYRQLRRFTRAKSR-VIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYL 59
           + A  A++  ++ R  R   + ++  +L+  ++ V FG          +     GGV Y 
Sbjct: 7   LPAIRAIYTYEMNRTRRTIGQSIVSPVLSTSLYFVVFGSA------IGSRMSEVGGVPYG 60

Query: 60  TYLIPGVVSMTVFSGSFISGVTVIWDKQF-GFLKETLVAPTSRSEAILGRIMGDSITALI 118
            +++PG++ +T+ + S  +    I+  +F G + E L AP S  E + G +   +  +++
Sbjct: 61  AFIVPGLMMLTLLTQSISNAAFAIYFPRFTGTIYELLSAPVSPFEIVAGYVGAAATKSVL 120

Query: 119 QGVLIMVLSLFLVSL---NPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGL 175
            G++I+  +   V +   +PF M+  +    + AV F+  G  +G+  +  E   LI  L
Sbjct: 121 LGLIILATAALFVPMEVRHPFWMLTFLV---LTAVTFSLFGFIIGIWADGFERLQLIPML 177

Query: 176 LMQPLIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFS--RFPIMLDVSILI 233
           ++ PL FL G FY +D +P   + +   NP+ Y V   R+   G +  R  +   +++  
Sbjct: 178 VITPLTFLGGTFYSLDMLPPVWRTVTLFNPVVYLVAGFRWSFFGTADVRVEVSAAMTLAF 237

Query: 234 VLSVFLVVLAMY 245
           +++  L+V  M+
Sbjct: 238 LIACLLIVRWMF 249