Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 263 a.a., multidrug ABC transporter permease from Pseudomonas simiae WCS417

 Score =  102 bits (255), Expect = 6e-27
 Identities = 62/242 (25%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 10  RQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTYLIPGVVSM 69
           R+  RF   ++R + +L+ PL+WL+ F  G+  A            + Y  Y+IPG+  M
Sbjct: 14  REWLRFVLQRTRFLSALVRPLLWLLVFAAGFRAALGISVIEPYDTYIPYEVYIIPGLACM 73

Query: 70  TVFSGSFISGVTVIWDKQFGFLKETLVAPTSRSEAILGRIMGDSITALIQGVLIMVLS-L 128
            +        +++++D++ G ++  L +P  R+  +  +++  ++ +L+Q    + ++ +
Sbjct: 74  ILLFNGMQGSLSMVYDREMGSMRVLLTSPLPRTFLLCSKLLATALISLLQVYGFLAIAWV 133

Query: 129 FLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQPLIFLSGAFY 188
           + V     G++  +    ++A+  +++G+ L   I   E F  +   ++ PL FLS A Y
Sbjct: 134 YGVQPPAMGLLIALPALLLVALMLSALGLLLSNAIRQLENFAGVMNFVIFPLFFLSSALY 193

Query: 189 PIDAM---PTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFLVVLAMY 245
           P+  M     W+  L  INP T+AV+  R+ L  + RF   L +++ + L+V   VLA+ 
Sbjct: 194 PLWKMRDSSEWLYWLCAINPFTHAVELVRFAL--YQRF-AGLALAVCLGLTVLFAVLAVL 250

Query: 246 TF 247
           TF
Sbjct: 251 TF 252