Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 259 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  102 bits (254), Expect = 8e-27
 Identities = 63/242 (26%), Positives = 126/242 (52%), Gaps = 10/242 (4%)

Query: 3   AFSAMFYRQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREI--FGGVDYLT 60
           A   + YR+++RFTR   +   +LL P + +V + +     F     R+I   GG  Y+ 
Sbjct: 11  ALQTIVYREVKRFTRIWPQ---TLLPPAITMVLYFV----IFGNLIGRQIGDMGGFTYME 63

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFG-FLKETLVAPTSRSEAILGRIMGDSITALIQ 119
           Y++PG++ M+V + S+ + V+  +  +F   ++E +V+P S    ++G  +G  +  L+ 
Sbjct: 64  YIVPGLIMMSVITNSYGNVVSSFFGSKFQRSIEELMVSPVSPHTILIGYTLGGVLRGLMV 123

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           GV++ +LSLF   L    +   I    + A  F+ +G    +   + +   +I   ++ P
Sbjct: 124 GVIVTLLSLFFTHLQVHHLGVTILVVVLTATIFSLLGFINAVFARNFDDISIIPTFVLTP 183

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFL 239
           L +L G FY I  +P + + ++  NP+ + V++ RY + G S   I + ++ ++V +V L
Sbjct: 184 LTYLGGVFYSISLLPPFWQTVSLANPVLHMVNAFRYGILGVSDIKISVAITFMLVATVVL 243

Query: 240 VV 241
            +
Sbjct: 244 YI 245