Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 259 a.a., putative ABC transporter - permease subunit from Pseudomonas putida KT2440

 Score =  101 bits (251), Expect = 2e-26
 Identities = 62/245 (25%), Positives = 127/245 (51%), Gaps = 10/245 (4%)

Query: 3   AFSAMFYRQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREI--FGGVDYLT 60
           A + + YR++RRF R   +   +LL P + +V + +     F     R+I   GG  Y+ 
Sbjct: 11  ALNTIVYREVRRFLRIWPQ---TLLPPAITMVLYFV----IFGNLIGRQIGDMGGFTYMQ 63

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFG-FLKETLVAPTSRSEAILGRIMGDSITALIQ 119
           Y++PG++ M+V + S+ + V+  +  +F   ++E +V+P S    ++G ++G  +  L  
Sbjct: 64  YIVPGLIMMSVITNSYGNVVSSFFGSKFQRSIEELMVSPVSPHTILVGYVLGGVLRGLAV 123

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           GV++ +LS+F   L    +   +    + A  F+ +G    +   + +   +I   ++ P
Sbjct: 124 GVIVTILSMFFTDLQVHHLGVTVAVVLLTATIFSLLGFVNAVFARNFDDISIIPTFVLTP 183

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFL 239
           L +L G FY I+ +P + + ++  NP+ + V+S RY + G S   I   ++ ++V +  L
Sbjct: 184 LTYLGGVFYSINLLPPFWQTVSLANPVLHMVNSFRYGILGVSDISIGTAITFMLVATAVL 243

Query: 240 VVLAM 244
            V+ +
Sbjct: 244 YVVCV 248