Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 259 a.a., Inner membrane transport permease YadH from Pseudomonas sp. DMC3

 Score = 96.7 bits (239), Expect = 4e-25
 Identities = 61/240 (25%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 3   AFSAMFYRQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREI--FGGVDYLT 60
           A   + YR+++RF R   +   +LL P + +V + +     F     R+I   GG  Y+ 
Sbjct: 11  ALQTIVYREVKRFMRIWPQ---TLLPPAITMVLYFV----IFGNLIGRQIGDMGGFTYME 63

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFG-FLKETLVAPTSRSEAILGRIMGDSITALIQ 119
           Y++PG++ M+V + S+ + V+  +  +F   ++E +V+P S    ++G  +G  +  L  
Sbjct: 64  YIVPGLIMMSVITNSYGNVVSSFFGSKFQRSIEELMVSPVSPHTILIGFTIGGVLRGLAV 123

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           G+++ +LSLF   L    +   I    + A  F+ +G    +   + +   +I   ++ P
Sbjct: 124 GLIVTILSLFFTDLQVHHLGVTILVVVLTATIFSLLGFINAVFARNFDDISIIPTFVLTP 183

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFL 239
           L +L G FY I  +P + + ++  NP+ + V++ RY + G S   I + ++ ++V +V L
Sbjct: 184 LTYLGGVFYSITLLPPFWQTVSLANPVLHMVNAFRYGILGVSDIRIGIAITFMLVATVVL 243