Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 255 a.a., ABC-type multidrug transport system, permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 81.6 bits (200), Expect = 1e-20
 Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 21/241 (8%)

Query: 9   YRQLRRFTRAKSRVIGSLLNPLVWLVFFGIG-WSRAFDFPAAREIFGGVDYLTYLIPGVV 67
           +   R F      ++  +L   ++ + FG    SR  D         GV Y  ++IPG+V
Sbjct: 14  FEMARTFRTITQSILAPVLTTSLYFIVFGTAIGSRMGDID-------GVTYGAFIIPGLV 66

Query: 68  SMTVFSGSFISGVTVIW-DKQFGFLKETLVAPTSRSEAILGRIMGDSITALIQGVLIMVL 126
            +++ S S  +    I+  K  G + E L AP S  E +LG +   +  +++ G+LI++ 
Sbjct: 67  MLSLLSESISNASFGIYMPKWSGTIYELLSAPVSWIEVLLGYVGAAATKSVMLGLLILLT 126

Query: 127 SLFLVSLNPFGMI-PVIFTSFIL--AVAFASVGISLGLKINSQEGFHLIFGLLMQPLIFL 183
           +   V   P+ +  PV    F+L  AV F+  G  +GL  ++ +   +I  L++ PL FL
Sbjct: 127 ARVFV---PYHIAHPVWMLGFLLLTAVTFSLFGFIIGLWADNFQKLQVIPLLVVTPLTFL 183

Query: 184 SGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFLVVLA 243
            GAFY I+ +P   + ++ +NP+ Y +   R+   G      + DV I +   + LV +A
Sbjct: 184 GGAFYSINMLPPLWQTVSLVNPVVYLISGFRWAFYG------VADVHIAVSTGMTLVFMA 237

Query: 244 M 244
           +
Sbjct: 238 L 238