Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 256 a.a., ABC-type multidrug transport system, permease component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 89.7 bits (221), Expect = 5e-23
 Identities = 53/233 (22%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 3   AFSAMFYRQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTYL 62
           A  +++ +++ RF R     + +L+ P++ +  + I +              G  Y+ ++
Sbjct: 8   ALKSIWAKEIHRFMRIW---VQTLVPPVITMTLYFIIFGNLIGSRIGE--MHGFSYMQFI 62

Query: 63  IPGVVSMTVFSGSFISGVTVIWDKQFGF-LKETLVAPTSRSEAILGRIMGDSITALIQGV 121
           +PG++ M V + S+ +  +  +  +F   ++E LVAP      I G + G     L  G+
Sbjct: 63  VPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPTHVIIAGFVGGGVARGLCVGI 122

Query: 122 LIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQPLI 181
           L+  +SLF V       + V  T  + A+ F+  G+   +   + +   LI   ++ PL 
Sbjct: 123 LVTAISLFFVPFQVHSWVFVALTLILTAILFSLAGLLNAVFAKTFDDISLIPTFVLTPLT 182

Query: 182 FLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIV 234
           +L G FY +  +P + + L+++NP+ Y +   RY   G    P++    +L++
Sbjct: 183 YLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGIHDVPLVTTFGVLVI 235