Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 256 a.a., predicted transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 10/238 (4%)

Query: 3   AFSAMFYRQLRRFTR--AKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLT 60
           A  +++ +++ RF R   ++ V   +   L +++F  +  SR  D         G  Y+ 
Sbjct: 8   ALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMH-------GFSYMQ 60

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFGF-LKETLVAPTSRSEAILGRIMGDSITALIQ 119
           +++PG++ M+V + ++ +  +  +  +F   ++E LVAP      I G + G     L  
Sbjct: 61  FIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFV 120

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           G+L+  +SLF V       + V  T  + AV F+  G+  G+   + +   L+   ++ P
Sbjct: 121 GILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTP 180

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSV 237
           L +L G FY +  +P + + L+++NP+ Y +   RY   G +  P++    +L+V  V
Sbjct: 181 LTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIV 238