Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 271 a.a., Inner membrane transport permease YadH from Alteromonas macleodii MIT1002

 Score = 91.7 bits (226), Expect = 1e-23
 Identities = 56/246 (22%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 3   AFSAMFYRQLRRFTR--AKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLT 60
           A + ++ ++  RF R   ++ V  ++   L +++F  +  +R  +        GG  Y+ 
Sbjct: 23  ALTTIWIKECTRFLRIWVQTLVPPAITMSLYFVIFGSLIGNRIGEM-------GGFTYME 75

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFGF-LKETLVAPTSRSEAILGRIMGDSITALIQ 119
           +++PG++ M+V + S+ +  +  +  +F   ++E LV+P   S  ILG + G    A++ 
Sbjct: 76  FIVPGLIMMSVITNSYANVSSSFFSAKFQRNIEELLVSPVPTSVIILGYVGGGVARAILI 135

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           G+++ ++SLF V +    +  +  T  + +  FA+ G+   +   + +   ++   ++ P
Sbjct: 136 GIIVTLVSLFFVDVQIHNLGIIALTLLLTSTLFATAGLINAVFAKTFDDISVVPTFVLTP 195

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFL 239
           L +L G FY +  +P + + ++  NP+ Y V+  RY   G S   + L +++L+  +  L
Sbjct: 196 LTYLGGVFYSLTLLPEFWQWVSKANPVVYMVNGFRYGFLGVSDVNVTLSLALLVGFNALL 255

Query: 240 VVLAMY 245
             +A Y
Sbjct: 256 FGVAYY 261