Pairwise Alignments

Query, 446 a.a., SLC13 family permease from Methanococcus maripaludis S2

Subject, 609 a.a., putative transporter from Pseudomonas putida KT2440

 Score =  135 bits (340), Expect = 4e-36
 Identities = 69/184 (37%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 42  ILGTAAVLFFTEALPLPVTAMLVPVALSFPGIDILSSSRAFADFGNKWVVLFMAAFILGE 101
           +L    +LF      + V A+LV +AL  P + IL+  +A A F +  VVL  A F++GE
Sbjct: 11  LLAIVIILFVINRPRMDVVALLVILAL--PLLGILTVEQALAGFSDPNVVLIAALFVIGE 68

Query: 102 AVFRTGFADKIGQLTVKAAGKSQLKLMLLVMLAIGTMSAFLSNTGTTAAFIPIVMGICVS 161
            + RTG A +IG+   + AG S+ +L++L+M+A+  + + +S+TG  A FIP+V+ I   
Sbjct: 69  GLVRTGIAYRIGEWMSERAGNSEARLLVLLMVAVAGLGSIMSSTGVVAIFIPVVLSIAAR 128

Query: 162 ASLKPGKLLIPMAYAASLGGTLTLIGTPPNGLVNDALEKSGIAPFGFFEFAKIGILIFIV 221
             L P +L++P+A+A  + G L+L+ TPPN +V+  L + G A F FF F   G+++ ++
Sbjct: 129 LQLSPSRLMMPLAFAGLISGMLSLVATPPNVVVHSELVRHGEAGFSFFSFTPFGLVVLVL 188

Query: 222 GILY 225
           GI Y
Sbjct: 189 GIGY 192



 Score =  128 bits (321), Expect = 6e-34
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 9/219 (4%)

Query: 232 KLLPESKAKAKDFVS-------DTLKYRTNKMWIATLVFTFVVLMTATGTIPLVTAFMLG 284
           K + + ++K KDF+        D +     +   A L    +V +  +G +P V A ++G
Sbjct: 386 KAVRQLQSKPKDFLVLSLPAEIDLVAPARTRAPQALLSLAVMVGLMVSGAVPNVIAALIG 445

Query: 285 ACMVVMTGCITMQEAFNSISWTTIFLFAGMLPLGSAMAATGAATMIANTVITYVHS--PL 342
             ++    CI M  A+ +I W ++ L  GMLP   A+  TG   +    ++  +    P 
Sbjct: 446 CLLMGAGRCIDMNSAYRAIHWQSLVLIVGMLPFAQALQKTGGIDLAVGGLVNVLGGAGPS 505

Query: 343 ALLAAAYILTALITEVMSNTATAALVMPLGIALADAFDVSAKPILMAIAVAASSCFLTPI 402
           A+LA  + +TA+I   +SNTATA L+ P+ ++ A    +S  P  M +A+AAS+ F+TP+
Sbjct: 506 AILACLFAVTAVIGLFISNTATAVLMAPVAVSTAAQLGMSPYPFAMTVALAASAAFMTPV 565

Query: 403 ATPPNMIILGPGGYSFKDYAKSGWPLEILCAVVAIAVIP 441
           ++P N ++LGPG Y F D+ K G P  +L  +V + ++P
Sbjct: 566 SSPVNTLVLGPGQYRFADFVKIGVPFTVLVMLVTVVMVP 604



 Score = 58.9 bits (141), Expect = 4e-13
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 9/184 (4%)

Query: 256 MWIATLVFTFVVLMTATGTIPLVTAFMLGACMVVMTGCITMQEAFNSISWTTIFLFAGML 315
           +W+  L+   ++L         V A ++   + ++ G +T+++A    S   + L A + 
Sbjct: 6   LWVLGLLAIVIILFVINRPRMDVVALLVILALPLL-GILTVEQALAGFSDPNVVLIAALF 64

Query: 316 PLGSAMAATGAATMIANTVITYV-HSPLALLAAAYILTALITEVMSNTATAALVMPLGIA 374
            +G  +  TG A  I   +     +S   LL    +  A +  +MS+T   A+ +P+ ++
Sbjct: 65  VIGEGLVRTGIAYRIGEWMSERAGNSEARLLVLLMVAVAGLGSIMSSTGVVAIFIPVVLS 124

Query: 375 LADAFDVSAKPILMAIAVAAS-SCFLTPIATPPNMII------LGPGGYSFKDYAKSGWP 427
           +A    +S   ++M +A A   S  L+ +ATPPN+++       G  G+SF  +   G  
Sbjct: 125 IAARLQLSPSRLMMPLAFAGLISGMLSLVATPPNVVVHSELVRHGEAGFSFFSFTPFGLV 184

Query: 428 LEIL 431
           + +L
Sbjct: 185 VLVL 188



 Score = 45.4 bits (106), Expect = 5e-09
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 18/190 (9%)

Query: 40  LIILGTAAVLFFTEALPLPVTAMLVPVALSFPG--IDILSSSRAFADFGNKW--VVLFMA 95
           L+ L     L  + A+P  V A L+   L   G  ID+ S+ RA       W  +VL + 
Sbjct: 421 LLSLAVMVGLMVSGAVP-NVIAALIGCLLMGAGRCIDMNSAYRAI-----HWQSLVLIVG 474

Query: 96  AFILGEAVFRTGFAD-KIGQLTVKAAGKSQLKLMLLVMLAIGTMSAFLSNTGTTAAFIPI 154
                +A+ +TG  D  +G L     G     ++  +      +  F+SNT T     P+
Sbjct: 475 MLPFAQALQKTGGIDLAVGGLVNVLGGAGPSAILACLFAVTAVIGLFISNTATAVLMAPV 534

Query: 155 VMGICVSASLKPGKLLIPMAYAASLGGTLTLIGTPPNGLVNDALEKSGIAPFGFFEFAKI 214
            +       + P    + +A AAS    +T + +P N LV       G   + F +F KI
Sbjct: 535 AVSTAAQLGMSPYPFAMTVALAAS-AAFMTPVSSPVNTLV------LGPGQYRFADFVKI 587

Query: 215 GILIFIVGIL 224
           G+   ++ +L
Sbjct: 588 GVPFTVLVML 597