Pairwise Alignments

Query, 341 a.a., 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB from Methanococcus maripaludis S2

Subject, 350 a.a., radical SAM protein from Methanococcus maripaludis S2

 Score = 75.9 bits (185), Expect = 1e-18
 Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 19/242 (7%)

Query: 72  CSVNPKCKYCGFAAGTSSEGYVKPF--RSDDDQIKSSSVAIENSGIKRVSCSSGHGYNGK 129
           C+++  CK+C  +  T  E    P   R   + I + S+ ++  G K    S G+GY  +
Sbjct: 37  CNLDDPCKFCFMS--TQKEKIKDPLKARRKPESILAESILMKRIGWKLEFISGGYGYKTE 94

Query: 130 EVIRALKAVKSASNLEVLVNAGADLTEECILELKKYKIDTICCNLETTNKTVFNNVKPGE 189
           E+   ++ V      +  +N G    E   L      I+ +   +ET N  +   + PG+
Sbjct: 95  ELNDTIEMVSYIQQAKQYLNVGIIDFENLNLN----NIEGVVGAVETVNPKLHEELCPGK 150

Query: 190 NLEDRINVCKMVKKHGVELSSGLLIGIGETYEDRVEHLFFLKELDVEEIPIMGFNPYKET 249
            L +   + K  K  G++    +++G+GET +D    L  ++EL+++ I     NP  ET
Sbjct: 151 PLSNTKEMLKKAKDMGLKTGITIILGMGETEKDIDLLLNLIEELNLDRITFYSLNPQDET 210

Query: 250 PMETCPKCSAIEQAKTIAIVRLLFPDIRITSPT-----PTMGPELSQFALLGGASNIATV 304
             +     + +E    ++ VRL FP ++I + T       +GP      L+   SN+ T 
Sbjct: 211 VFQGKTSVTTLEYMNWVSTVRLNFPKMKIITGTWVDKLTNIGP------LVMAGSNVITK 264

Query: 305 IP 306
            P
Sbjct: 265 FP 266