Pairwise Alignments

Query, 302 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 642 a.a., OB-fold nucleic acid binding domain-containing protein from Methanococcus maripaludis S2

 Score = 67.8 bits (164), Expect = 6e-16
 Identities = 66/289 (22%), Positives = 130/289 (44%), Gaps = 40/289 (13%)

Query: 17  KLENNSNKKNIDSIDTIKLSDIIEKMIEINSIVRIEKI--------FEEKIVSQNPVVNV 68
           K + +++KK ++ I  IK  DI+    E + +  +  +        F+        V N+
Sbjct: 377 KKDESASKKILEEITEIK--DILNGSAENSDVTVVAMVTNAYPVNEFQRSSGGTGKVRNI 434

Query: 69  VVNDGSARGLLSLWSEQISLLNELNEGDAILIENAHAPKKYKDRIHLALSKSGKISKIES 128
           ++ DG+    ++LW        E++EGD + + + +A K+  + + L+  + G+I     
Sbjct: 435 MLEDGTGSIRMALWDSDAE--TEISEGDVVKLIHGYA-KESGEYMDLSTGRFGRI----- 486

Query: 129 DLPTIDELLKKSSAQRNDFSRKSISELKEGIGAELRGLIVAIHSKEPYFPVCDKCNKKMT 188
                 E+  K  + ++   R  I++L+EG+  E+ G IV    ++    +C  C K++ 
Sbjct: 487 ------EVNPKGVSIKSP--RNYIADLEEGVSTEISGTIVDYRKQDVILNLCPNCRKRLN 538

Query: 189 LKKGYAVCKCGNKVDEEDENLKWLFLCTCTLDDGSGTI--RVTLNNNTNYLDLEELKKII 246
           L     +C+   +V+  +     L +   T+DDG+G I  RV  +N     +L + K   
Sbjct: 539 LVDNKYLCEVCGEVEPNE-----LLVSNLTVDDGTGVINCRVYGSNVEKVTELSKNKLKE 593

Query: 247 IDDEEILDVLNNKLLGLDILTSGFTIYDEYLKDTAFRCNNWNKIDIMEE 295
           ++ + + DV     LG D+L  G   +     D  F     N +D+ +E
Sbjct: 594 MNMDALADV-----LGKDVLFYGTPSFRN--DDLDFAVKRVNFVDVSKE 635



 Score = 51.2 bits (121), Expect = 6e-11
 Identities = 64/254 (25%), Positives = 103/254 (40%), Gaps = 51/254 (20%)

Query: 28  DSIDTIKLSDIIEKMIEINSIVRIEKIFEEKIVSQNPVVNVVVNDGSARGLLSLWSEQIS 87
           D  D  K  ++  K+IEI+      K F  K  S   + +V + D +    L+LW+++  
Sbjct: 66  DIADGQKNVEVTGKIIEISPA----KDFNRKDGSTGKLASVTIGDNTGITRLTLWNDKTD 121

Query: 88  LLNELNEGDAILIENAHAPKKYKDRIHLALSKSGKISKIESDLPTIDELLKKSSAQRNDF 147
           L+  L +GD + IENA + +K+ D++ L    SG    IE         LKK    R   
Sbjct: 122 LIEGLKKGDVVKIENAFS-RKWNDKVEL---NSGSELSIEK--------LKKYDESRYPI 169

Query: 148 SRKS--ISELKEGIGAELRGLIVAIHSKEPYFPVCDKCNKKMTLKKGYAVCKCGNKVDEE 205
            + +  ISEL   +   +   +V  + K+ +                       ++ D  
Sbjct: 170 LKDNYKISELMPNLSGTINAEVVTAYPKKEF-----------------------SRKDGT 206

Query: 206 DENLKWLFLCTCTLDDGSGTIRVTLNNNTNYLDLEELKKIIIDDEEILDVLNNKLLGLDI 265
              LK LF     L D +G+IR TL N     D E  K    D  E+   +     GL+I
Sbjct: 207 KGQLKSLF-----LKDDTGSIRGTLWN--ELADFEVKKG---DIAEVSGYVKQGYSGLEI 256

Query: 266 LTSGFTIYDEYLKD 279
                 I ++ +K+
Sbjct: 257 SVDNIGIIEKSVKE 270



 Score = 35.0 bits (79), Expect = 5e-06
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 24/126 (19%)

Query: 26  NIDSIDTIKLSDIIEKMIEINSIVRIEKIFEEKIVSQNPVVNV----------------- 68
           ++D+I  I+ S   EK +E  SI  +     E +     +VN+                 
Sbjct: 257 SVDNIGIIEKSVKEEKPVEKLSISELTSFDGEYVTVSGNIVNISGSREVQFSDRTAEVQD 316

Query: 69  -VVNDGSARGLLSLWSEQISLLNELNEGDAILIENAHAPKKYKD-----RIHLALSKSGK 122
             +NDG+     + W    S+L+ L EGD + I NA   + Y D     R  L  +   +
Sbjct: 317 IYINDGTGMVKTAFWGTNRSILDGLKEGDYVTISNAKL-RTYTDNTGEKRADLTYNYMSE 375

Query: 123 ISKIES 128
           + K ES
Sbjct: 376 LKKDES 381