Pairwise Alignments

Query, 343 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 350 a.a., ABC transporter spermidine/putrescine-binding protein from Variovorax sp. SCN45

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 10/196 (5%)

Query: 2   KNLKGILAIFCVMAVLVFAGCTEQQASNVSQEEQIVTVYVAYGSLDLIADEFEKDTGIKM 61
           +  K   ++  + A+L  AG    Q   +       T+  AY     +   FEK  G K+
Sbjct: 3   RTAKSPTSVLLLAALLAAAGTAGAQTKTIYIGMNGGTMEKAY--TQYVFPAFEKAYGAKV 60

Query: 62  EYVSLSSGEALSRLKAEQSNPSADV-WLGGGIDAFISAQQDGLLEAYK-SPNAKDIDPLF 119
             V  +S + L++ +A +  P   V +L  G+   + A   GL +  K S +  +I P  
Sbjct: 61  VVVPGTSSDILAKAQANKDKPQMHVMFLDDGV--MVRAIGMGLCQKQKPSQSLSEIYPAA 118

Query: 120 VEEDGYWTGVSLVTIGILENTDLLSEKGLPEPQTWDDLITDDYKGELIASNPTVSGTAYF 179
             +D   +GVSL   G+  N  +  EKG   P +W DL    YKG+++  + + S    F
Sbjct: 119 RFKDDMASGVSLGMTGLAYNAKMFKEKGWAPPTSWMDLADPKYKGKVVFQSMSSSS---F 175

Query: 180 TICGILQMYGEDEGWN 195
            + G L M+   +G N
Sbjct: 176 GLHGFL-MFNRIQGGN 190