Pairwise Alignments

Query, 343 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 349 a.a., ABC transporter spermidine/putrescine-binding protein from Variovorax sp. SCN45

 Score = 64.7 bits (156), Expect = 3e-15
 Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 11/253 (4%)

Query: 58  GIKMEYVSLSSGEALSRLKAEQSNPSA--DVWLGGGIDAFISAQQDGLLEAYKSPNAKDI 115
           G+K+  V  ++  A  RL  +    +A  DV+    I  ++  +   LL  Y   +A  +
Sbjct: 69  GVKVNVVRTTAQVAFQRLNQDLKARTANCDVFSSTDIGHYVDLKARKLLTKYTPASAALM 128

Query: 116 DPLF--VEEDGYWTGVSLVTIGILENTDLLSEKGLPEPQTWDDLITDDYKGELIASNPTV 173
           D     ++ DGY+   S   +G++ N++ +  K    P +W DL    ++G     +P  
Sbjct: 129 DSRLQNLDADGYYHAASAFMVGLVYNSNKV--KAAEAPTSWMDLADPKWRGLASVGHPGF 186

Query: 174 SGTAYFTICGILQMYGEDEGWNYLDKFYQNTPFLTKRGSGPGNLVTAGEYAYGVAPDPHT 233
           SG        + ++YG+  GW    K   N P + +        V +GE +    P    
Sbjct: 187 SGAVGTWCIEMRKLYGD--GW--FKKLALNKPQVGRSIIDTVTTVNSGERSISAGPVNLA 242

Query: 234 TVIADSELPVK-SVFLNKVIWWPSPVSIVSGAKHPENAKIFVDWCLSKEGQEVLMQASPR 292
            + A    P+  S      +   SP +I++ A HP  +K+F++W L  E  + +      
Sbjct: 243 ALTASKGNPLAVSAPKEGPVLIVSPSAIMANAPHPNASKLFMEWMLVSEDADRITTQLYG 302

Query: 293 VPVRGDIEVIEGV 305
           +P R     + GV
Sbjct: 303 IPRRAGARPLPGV 315