Pairwise Alignments

Query, 411 a.a., ammonium transporter from Methanococcus maripaludis S2

Subject, 445 a.a., ammonia channel protein from Pseudomonas simiae WCS417

 Score =  155 bits (392), Expect = 2e-42
 Identities = 127/418 (30%), Positives = 189/418 (45%), Gaps = 39/418 (9%)

Query: 22  NSSDVMFLIFTGAFIFIMHL-GFAMLEGGQVREKNVNNAMMKNMGDWIIGCISWLLVGSV 80
           NS D  +++   A +  M + G A+  GG VR KN+ + MM+      +  I W++ G  
Sbjct: 33  NSGDTAWMLTATALVLFMTIPGLALFYGGMVRSKNILSVMMQCFAITGLISILWVVYGYS 92

Query: 81  IA--------RTLNPADFFIWWGK--IASATPFLTNNGLELANWFLGLVFAATAATI--- 127
           IA          +N   FF   GK  +A  TP        L    + + F  T A I   
Sbjct: 93  IAFDTTGMEQGVVNFNSFFGGMGKAFLAGVTPASITGPAALFPEAVFITFQMTFAIITPA 152

Query: 128 -VAGGIAERIKFKSYILISIVITALLYPFFSYLGPWGAGVIPFH----DYAGSLMVHGVG 182
            + G  AER+KF + ++   +   L+Y   +++   G G + +     D+AG  +VH   
Sbjct: 153 LIVGAFAERMKFSAMLIFMAIWFTLVYAPIAHMVWSGNGGLMWDWGVLDFAGGTVVHINA 212

Query: 183 GFLALGLIAAIGPRFGRFVNKKAITIPGHNIPMSILGAYILAFGWYGFNVGSSLALSDIS 242
           G   L     +G R G      A     HN+  +++GA +L  GW+GFN GS+ A +  +
Sbjct: 213 GVAGLVACIVLGKRKGFPTTPMA----PHNLGYTLIGAAMLWIGWFGFNAGSAAAANGTA 268

Query: 243 GLVCATTTLAMAGGGLGGCL-----FSKNDVLYTANGLLAGTVAICAGTDIVSPLGALII 297
           G+    T +A A   LG          K   L  A+G++AG VAI      V P+GAL+I
Sbjct: 269 GMAMLVTQIATAAAALGWMFAEWITHGKPSALGIASGVVAGLVAITPAAGTVGPMGALVI 328

Query: 298 GFIAGSQVPLIF---KIVEKMGLDDVCGVIPVHATSGALGAILAGIFGMTAFGGVGGVS- 353
           G +AG  V   F    +  K+G DD      VH   G +GAIL G+F   A GG G V+ 
Sbjct: 329 GLVAG--VICFFCATSLKRKLGYDDSLDAFGVHGIGGIVGAILTGVFAAPALGGFGTVTD 386

Query: 354 ----LTEQIIATLICAVYGTGAGFILGKLVGAVTGGLRVKESEEKAGLDISIHKLPAY 407
               +  Q        +Y     +++ K++  V  GLRV E EE  GLD++ H    Y
Sbjct: 387 VAAQVWIQCKGVGFTVIYTAIVTYVILKVLDMVM-GLRVTEEEEAVGLDLAQHNERGY 443