Pairwise Alignments

Query, 408 a.a., ammonium transporter from Methanococcus maripaludis S2

Subject, 445 a.a., ammonia channel protein from Pseudomonas simiae WCS417

 Score =  188 bits (477), Expect = 3e-52
 Identities = 142/415 (34%), Positives = 200/415 (48%), Gaps = 37/415 (8%)

Query: 23  SGDVMFLVLMGVLVFSMQL-GFALLEGGQVRKKNVNNVMMKNMADWLIGAVSWLFIGGVL 81
           SGD  +++    LV  M + G AL  GG VR KN+ +VMM+  A   + ++ W+  G  +
Sbjct: 34  SGDTAWMLTATALVLFMTIPGLALFYGGMVRSKNILSVMMQCFAITGLISILWVVYGYSI 93

Query: 82  SVSLVPAD--------FFSWWGQIFTTNFANNGI--------DLANWFFGLVFAATAATI 125
           +      +        FF   G+ F        I        +     F + FA     +
Sbjct: 94  AFDTTGMEQGVVNFNSFFGGMGKAFLAGVTPASITGPAALFPEAVFITFQMTFAIITPAL 153

Query: 126 VSGGVAERIKFKSYLLMSIIITAILYPLFVYLGPWGSGMIPFN----DYAGSFVVHGLGG 181
           + G  AER+KF + L+   I   ++Y    ++   G+G + ++    D+AG  VVH   G
Sbjct: 154 IVGAFAERMKFSAMLIFMAIWFTLVYAPIAHMVWSGNGGLMWDWGVLDFAGGTVVHINAG 213

Query: 182 FLALGAIAALGPRIGKFVNKKAISIPGHNIPMSVFGAFVLAIGWYGFNVGSSFAVADISG 241
              L A   LG R G      A     HN+  ++ GA +L IGW+GFN GS+ A    +G
Sbjct: 214 VAGLVACIVLGKRKGFPTTPMA----PHNLGYTLIGAAMLWIGWFGFNAGSAAAANGTAG 269

Query: 242 LVCATTTLAMAGGGIGALLA-----SKDDVLFTANGIVAGLVAICSGTDVVSPIGALIIG 296
           +    T +A A   +G + A      K   L  A+G+VAGLVAI      V P+GAL+IG
Sbjct: 270 MAMLVTQIATAAAALGWMFAEWITHGKPSALGIASGVVAGLVAITPAAGTVGPMGALVIG 329

Query: 297 LVAG-IQVPIVYKIVEKMGLDDVCGVIPVHGTAGILGGILTGVFGMAALGGAGGVSLVN- 354
           LVAG I       +  K+G DD      VHG  GI+G ILTGVF   ALGG G V+ V  
Sbjct: 330 LVAGVICFFCATSLKRKLGYDDSLDAFGVHGIGGIVGAILTGVFAAPALGGFGTVTDVAA 389

Query: 355 ----QLIAAGLTVVYGTGLGFGLGKLVGGFTGGLRVTEEEEKMGLDLAEHKLPAY 405
               Q    G TV+Y   + + + K++     GLRVTEEEE +GLDLA+H    Y
Sbjct: 390 QVWIQCKGVGFTVIYTAIVTYVILKVL-DMVMGLRVTEEEEAVGLDLAQHNERGY 443