Pairwise Alignments

Query, 408 a.a., ammonium transporter from Methanococcus maripaludis S2

Subject, 445 a.a., Ammonia channel from Pseudomonas sp. DMC3

 Score =  190 bits (482), Expect = 8e-53
 Identities = 139/415 (33%), Positives = 202/415 (48%), Gaps = 37/415 (8%)

Query: 23  SGDVMFLVLMGVLVFSMQL-GFALLEGGQVRKKNVNNVMMKNMADWLIGAVSWLFIGGVL 81
           SGD  +++    LV  M + G AL  GG VR KN+ +V+M+  A   + ++ W+  G  +
Sbjct: 34  SGDTAWMLTSTALVLFMTIPGLALFYGGMVRSKNILSVLMQCFAITGLISILWVIYGYSI 93

Query: 82  SVSLVPAD--------FFSWWGQIFTTNFANNGI--------DLANWFFGLVFAATAATI 125
           +      +        FF   G+ F      + I        +     F + FA     +
Sbjct: 94  AFDTTGMEQGVVNFNSFFGGMGKAFLAGVTPSSITGPAALFPEAVFITFQMTFAIITPAL 153

Query: 126 VSGGVAERIKFKSYLLMSIIITAILYPLFVYLGPWGSGMIPFN----DYAGSFVVHGLGG 181
           + G  AER+KF + L+   I   ++Y    ++   G+G + ++    D+AG  VVH   G
Sbjct: 154 IVGAFAERMKFSAMLIFMGIWFTLVYAPIAHMVWSGNGGLMWDWGVLDFAGGTVVHINAG 213

Query: 182 FLALGAIAALGPRIGKFVNKKAISIPGHNIPMSVFGAFVLAIGWYGFNVGSSFAVADISG 241
              L A   LG R G      A     HN+  ++ GA +L +GW+GFN GS+ A    +G
Sbjct: 214 IAGLVACLVLGKRKGFPTTPMA----PHNLGYTLMGAAMLWVGWFGFNAGSAAAANGTAG 269

Query: 242 LVCATTTLAMAGGGIGALLAS-----KDDVLFTANGIVAGLVAICSGTDVVSPIGALIIG 296
           +    T +A A   +G + A      K   L  A+G+VAGLVAI      V P+GAL+IG
Sbjct: 270 MAMLVTQIATAAAALGWMFAEWVTHGKPSALGIASGVVAGLVAITPAAGTVGPMGALVIG 329

Query: 297 LVAGIQVPIVYKIVE-KMGLDDVCGVIPVHGTAGILGGILTGVFGMAALGGAGGVSLVN- 354
           L AG+        ++ K+G DD      VHG  GILG ILTGVF   ALGG G V+ +  
Sbjct: 330 LAAGVVCFFCATTLKRKLGYDDSLDAFGVHGIGGILGAILTGVFAAPALGGFGTVTDIGA 389

Query: 355 ----QLIAAGLTVVYGTGLGFGLGKLVGGFTGGLRVTEEEEKMGLDLAEHKLPAY 405
               Q+   G TV+Y   + F + K++     GLRVTEEEE +GLDLA+H    Y
Sbjct: 390 QVWIQIKGVGFTVIYTAIVTFIILKVLDAVM-GLRVTEEEESVGLDLAQHNERGY 443