Pairwise Alignments

Query, 369 a.a., TIGR04013 family B12-binding domain/radical SAM domain-containing protein from Methanococcus maripaludis S2

Subject, 488 a.a., tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase from Xanthobacter sp. DMC5

 Score = 67.0 bits (162), Expect = 1e-15
 Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 42/303 (13%)

Query: 40  DILIYSFMSMQEK---EVLSEINELKKLKKD-----VILIAGGAHPSGCPEDTLNLGFDH 91
           D++I +   ++EK   +V SE+  L+K K++     +I +AG    +   E         
Sbjct: 69  DLVILNTCHIREKAAEKVYSELGRLRKQKQEAGSDTMIAVAGCVAQAEGAEIMRRAPVVD 128

Query: 92  VIVG-EGEISLPNLINSIKSGKTPEKIIKGK-PIENFDDY---------EKIWPLAPIEI 140
           V+VG +    LP L+   K+GK   +++  + P E+  D+             P A + +
Sbjct: 129 VVVGPQSYHRLPELLAEAKAGK---RVVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTV 185

Query: 141 TRGCPYNCRFCQTPQIFGKNIRHRSIESIVKIVKTMGD--IRFVTPNAFSYGSKTGTKPD 198
             GC   C FC  P   G  +  R +  I+     + D  +R +T    +  +  G  PD
Sbjct: 186 QEGCDKFCTFCVVPYTRGAEVS-RPVTKILDEAARLLDQGVREITLIGQNVNAFHGEGPD 244

Query: 199 --IEKLEKLMKSLFEIK--KRLFFGTFPSEVRPEFVNFETLDLVNKYCD----NRYIHFG 250
             +  L +LM+ L ++K   RL + T       E       DL+  + D      Y+H  
Sbjct: 245 GKVWSLARLMERLAQMKGLARLRYTTSHPRDMGE-------DLIAAHRDLPQLMPYLHLP 297

Query: 251 AQSGSDEVLKHIRRGHLVSDVINAVETSKEC--DLIPKVDFIFGFPDETDDQRKESIDLM 308
            QSGSD +L  + R H     ++ +E  ++   DL    DFI GFP ETD   ++++DL+
Sbjct: 298 VQSGSDRILAAMNRKHGRDLFLSLIEKMRDARPDLALSSDFIVGFPGETDRDFEDTLDLV 357

Query: 309 KYI 311
           + +
Sbjct: 358 REV 360