Pairwise Alignments

Query, 448 a.a., RNase J family beta-CASP ribonuclease from Methanococcus maripaludis S2

Subject, 545 a.a., Ribonuclease J (endonuclease and 5 from Sphingobium sp. HT1-2

 Score =  177 bits (448), Expect = 1e-48
 Identities = 129/447 (28%), Positives = 216/447 (48%), Gaps = 39/447 (8%)

Query: 2   QLEVVAIGGYEEVGRNMTAVNIDGEIIIFDMGVRLDRIMIHEDTDISKMHSLNLIEMGVI 61
           +L  +A+GG  E+G N+      G+ ++ D+G+     +               +E+ V+
Sbjct: 6   ELLFLALGGSGEIGMNVNLYGCQGKWVMVDLGLTFADPLYPG------------VEL-VL 52

Query: 62  PDDTVMKNIEGEVKAIVLTHGHLDHIGAITKLAHRYNAPIIGTPYTLELVKREILSEKKF 121
           PD   ++  + ++  IVLTHGH DHIGAI  LA     P+  TP+T  L++ + L E+  
Sbjct: 53  PDLAFIEERKDDLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIRLK-LEEEGL 111

Query: 122 DVRNPLITLENGNKLDLTANITLEFVKITHSIPDAAMAVLHTPYGAVVYGNDFKFDNFPV 181
                L  +EN    +L       +V + HSIP+    ++ TP+G + +  D+K D  P+
Sbjct: 112 TKEVKLHVIENEGSFNL-GPFGFRYVPLAHSIPEGNAVLIDTPHGRIFHTGDWKLDAAPL 170

Query: 182 VGEKPDYKALKRIGKQGVIAMVSESTRVDFEGKTASEGVAANLLKNDLLGTDNEDNAVVV 241
           +G+    + L  IG +GV+A+V +ST V     + SE    + L   +         V+V
Sbjct: 171 LGQPSTPEELTAIGDEGVLALVCDSTNVFNPEPSGSESTVRDGLMQTVAAAKGR---VLV 227

Query: 242 TTFSSHIARIKSITDIASKMGRIPVLVGRSMSKYCGIAQDIGLVK-FPKETKICWDPSSI 300
           TTF+S+ AR++++ ++A+  GR   + GRS+ +    A+  G +K FP    + WD +  
Sbjct: 228 TTFASNAARVQTLGEVAAATGRKLCVAGRSLDRIISTAKAAGYLKDFP--PLVDWDDA-- 283

Query: 301 DKTFHQIMKDGKENYLMVVTGHQGEEGAVLSRMATNKTPFRFEKYDQVVFSADVIPNPMN 360
                  M   +   + + TG QGE  A LSR+A +  P +  + D VVFS+  IP    
Sbjct: 284 -------MDLPRSEVMFIATGGQGEARAALSRIAFDSHPIKLAEGDTVVFSSKQIPGNEI 336

Query: 361 AAQRYLLEARLNLAGVRLFKG----AHVSGHAAKEDHRDILRWLQPEHLIPAHGDFNLTS 416
           A  R  ++  L   G+ +        HVSGH  + +   + RW++P  L+P HG+    +
Sbjct: 337 AIGR--IQNALATKGIIMVTDRQAEVHVSGHPGRPELESMYRWIRPAILLPVHGERRHMA 394

Query: 417 AYAKLAEEEGFRLGEDVHLLRNGQSLK 443
             A+L    G     D  +  NG  L+
Sbjct: 395 EQARLGLATGI---PDAVVQSNGDLLR 418