Pairwise Alignments

Query, 355 a.a., type 2 isopentenyl-diphosphate Delta-isomerase from Methanococcus maripaludis S2

Subject, 343 a.a., Isopentenyl-diphosphate delta-isomerase from Xanthobacter sp. DMC5

 Score =  198 bits (503), Expect = 2e-55
 Identities = 122/342 (35%), Positives = 193/342 (56%), Gaps = 9/342 (2%)

Query: 1   VNNNSIEYRKLEHL-IVCDHCDVEYKKGTLLEDVELIHSGISNCDLDDIDTSIEIFGKKL 59
           ++ N+   RK +H+ IV     V  +     +    +H  +    LD +D S  + G++L
Sbjct: 1   MDENAAGRRKEDHIDIVLSGDRVASRVDAGFDRWRFVHCALPELSLDAVDLSTSVLGRRL 60

Query: 60  NAPLIVAAITGGHPKAKEVNKNIAIAVEELNLGMGVGSQRAAISKSYLEDTYSVVRDHTS 119
            APL+++A+TGG  +++ +N ++A A + L + +GVGSQR A+           +R    
Sbjct: 61  KAPLLISAMTGGPARSEAINAHLAEAAQALGIALGVGSQRIAVETGAAGGLGGDLRRRAP 120

Query: 120 S-LIIGNLGAVNFVEDSWDEEIISKSVEMIDADAMAIHFNPLQEAIQPEGDVNFKGLNIL 178
           + L++ NLGA   +     +    ++VEMI ADA+ IH NPLQEAIQ  GD +++G  +L
Sbjct: 121 NVLLLANLGAAQLLAADGRDNA-RRAVEMIGADALVIHLNPLQEAIQEGGDRDWRG--VL 177

Query: 179 KEIISNYNKIHGKIPFIAKQVGEGFSKKDAIFLKEIGFDAIDVGGSGGTSWAAVELYRIK 238
             I      +H  +P + K+VG G S   A  L + G  A+DV G+GGT+WA VE  R  
Sbjct: 178 HAITGLCTNLH--VPVVVKEVGFGLSAPVARRLVKCGVAALDVAGAGGTNWALVEGARGT 235

Query: 239 DEEQKNFSNQYFNWGIPTAASILEVNSAFSG-PIIATGGIRTGIDIAKSISIGANCCGTA 297
              Q   +  + +WGIPTA ++ ++ +A    PIIA+GGIR G+D AK+I +GA+  G A
Sbjct: 236 GRTQA-LAAAFADWGIPTADAVADLRAALPDVPIIASGGIRDGVDAAKAIRLGADLVGQA 294

Query: 298 LPILKAALKSSEAVTTVLERMIKELKTTMFLTGCNNINELKS 339
              LKAA+ S+EAV    E + ++L+   F+TG  ++  L+S
Sbjct: 295 AATLKAAVTSTEAVVAHFEVLAEQLRIAAFVTGAGHLEALRS 336