Pairwise Alignments

Query, 371 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

 Score =  144 bits (363), Expect = 8e-39
 Identities = 100/307 (32%), Positives = 161/307 (52%), Gaps = 32/307 (10%)

Query: 83  PEYAFK-----VVSLYPKEGGIITKDTLFKLENNCKPQNSPKFKETTFEEVVGQIDAKKK 137
           P YA +     VVS  PK    I  +T  +L    +     +  + T+++V G  +   +
Sbjct: 159 PAYALQEIRLIVVSTVPKGIVHIDAETEVELRAEYEEPRESRRADVTYDDVGGMAETIDQ 218

Query: 138 CKIVIKY-LENPELF---GEWAPKNILFYGPPGTGKTMLARALATETDVPLYLIKATELI 193
            + +++  L  PELF   G   PK ++ +GPPGTGKT LARA+A E++   +LI   E++
Sbjct: 219 LREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARAVANESEAEFFLINGPEIM 278

Query: 194 GDHVGDGSKQIESLYENASENTPSIIFIDELDAIALSRQFQSLRGDVSE-VVNALLTELD 252
           G   G+  K++  ++E A++  PSI+FIDE+D+IA  R    + G+  + +V  LLT +D
Sbjct: 279 GSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKR--GQVTGETEKRLVAQLLTLMD 336

Query: 253 GIKNNLGVVTIAATNNPEMLDNAIR--SRFEEEIEFKMPDDNERLKILELYAEKMPIAVN 310
           G++    +V IAATN PE +D A+R   RF+ EI   +PD+  R +IL ++   MP+   
Sbjct: 337 GLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDERGRREILGIHTRGMPLGDR 396

Query: 311 ADLKKYVEKTKGMNGRTIKE----------KFLKPALH-------KAILEDRESITQKDL 353
            DL +    T G  G  +            + L P L+         +LED  S+T++D 
Sbjct: 397 VDLAELARMTYGFVGADLAALTREAAIETVRRLMPRLNLEEGTIPPDVLEDL-SVTREDF 455

Query: 354 DEIIKKI 360
              IK++
Sbjct: 456 LSAIKRV 462



 Score =  125 bits (314), Expect = 4e-33
 Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 7/211 (3%)

Query: 127 EVVGQIDAKKKCKIVIKY-LENPELF---GEWAPKNILFYGPPGTGKTMLARALATETDV 182
           ++ G  DA+ + K  ++  L++P+ F   G    K  L YGPPGTGKT+LA+A+A E   
Sbjct: 481 DIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQA 540

Query: 183 PLYLIKATELIGDHVGDGSKQIESLYENASENTPSIIFIDELDAIALSRQFQSLRGDVSE 242
                K+++L+    G+  +QI  L+  A +  P++IFIDELD++  +R        V+E
Sbjct: 541 NFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPAVTE 600

Query: 243 -VVNALLTELDGIKNNLGVVTIAATNNPEMLDNAI--RSRFEEEIEFKMPDDNERLKILE 299
            VVN +L E+DG++    VV I ATN P ++D A+    RF+E I   +PD   R +IL 
Sbjct: 601 RVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRILA 660

Query: 300 LYAEKMPIAVNADLKKYVEKTKGMNGRTIKE 330
           ++ +KMP+A + DL +   +T+   G  +++
Sbjct: 661 IHTKKMPLASDVDLDQLAARTERFTGADLED 691