Pairwise Alignments

Query, 371 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 644 a.a., protease, ATP-dependent zinc-metallo from Escherichia coli BL21

 Score =  143 bits (361), Expect = 1e-38
 Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 122 ETTFEEVVGQIDAKKKCKIVIKYLENPELF---GEWAPKNILFYGPPGTGKTMLARALAT 178
           +TTF +V G  +AK++   +++YL  P  F   G   PK +L  GPPGTGKT+LA+A+A 
Sbjct: 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207

Query: 179 ETDVPLYLIKATELIGDHVGDGSKQIESLYENASENTPSIIFIDELDAIALSRQFQSLRG 238
           E  VP + I  ++ +   VG G+ ++  ++E A +  P IIFIDE+DA+   R    L G
Sbjct: 208 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG-AGLGG 266

Query: 239 ---DVSEVVNALLTELDGIKNNLGVVTIAATNNPEMLDNAI--RSRFEEEIEFKMPDDNE 293
              +  + +N +L E+DG + N G++ IAATN P++LD A+    RF+ ++   +PD   
Sbjct: 267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326

Query: 294 RLKILELYAEKMPIAVNADLKKYVEKTKGMNGRTIKEKFLKPALHKA 340
           R +IL+++  ++P+A + D       T G +G  +     + AL  A
Sbjct: 327 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAA 373