Pairwise Alignments

Query, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 336 a.a., tRNA pseudouridine(13) synthase TruD from Rhodanobacter sp000427505 FW510-R12

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 2   KFRQKHEDFIVNEILEYELNDYGNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGL 61
           + R   EDF V EIL Y+ +  G + L  ++K G         L+K   VP   +GY GL
Sbjct: 16  RLRSMPEDFQVEEILGYDADGSGEHALLWVEKRGANTDWVARELAKFAGVPPVAVGYAGL 75

Query: 62  KDRHAITTQYVSIPKEYGKLSLD-----EDNLKLEYVGTIEKPLKIGRLYGNRFEIIARA 116
           KDRHA+T Q  S+ +  GK   D       ++K+       + LK G L GNRF ++ R 
Sbjct: 76  KDRHAVTRQMFSV-QLAGKPDPDWSAFPHADVKVLAATRHARKLKRGALRGNRFVLVLRE 134

Query: 117 VDKDEFLKIADNIRNLSSGAPNYYDDQRFG 146
           V  D         +  + G PNY+ +QRFG
Sbjct: 135 VAGDRAAAEQVLTQIAARGVPNYFGEQRFG 164



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 233 VDNRLKELFISAYQSYLWNECLKEFLKEVI---PKENRIYVDYSCGTFLFYENIEEELFD 289
           VD   +   +SA +S+++N  L   +  V    P +  I+      ++   E   + L +
Sbjct: 182 VDRDQRSFLLSAARSHIFNAVLAARVGRVAWDTPLDGEIWSLAGSRSWFGPEPFTDVLAE 241

Query: 290 KLKEMDFPTIVSDVEYTDPEKRIIKAILKKERIKISD--FEKLDFGKLKYTKRPIISIPE 347
           +L   D           +P        L++E    +D     L   +++  +RP+  +P+
Sbjct: 242 RLARADIHPSGPLWGQGEPPATGEAGALEREVAAANDDLAAGLAAARMEQERRPLRLLPK 301

Query: 348 DVNTGKFKSDELNSKKYKIDLEFSLKKGSYATIILKRVFNIL 389
           D++      D L       +L F L  G+YAT++++ + + L
Sbjct: 302 DLHWRWLDDDAL-------ELSFELPAGTYATVVVRELASTL 336