Pairwise Alignments

Query, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 352 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score = 61.2 bits (147), Expect = 4e-14
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 8   EDFIVNEILEYELNDYGNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGLKDRHAI 67
           EDF V+E+L+  L   G +    ++K G+   +A   ++K   VP + + Y GLKDR A+
Sbjct: 26  EDFQVDEVLDIPLTGEGEHLWLWVEKRGLNTEEAARRIAKAAGVPLRTVSYAGLKDRQAL 85

Query: 68  TTQYVSIPKEYGKLSLD-----EDNLKLEYVGTIEKPLKIGRLYGNRFEIIARAVDKDEF 122
           T Q+ S+    GK   D      D LK+      ++ L+ G    N F +    +  D  
Sbjct: 86  TRQWFSVQLP-GKADPDMSAAENDTLKILKTARHKRKLQRGAHSANGFTLRLTQLAGDTA 144

Query: 123 LKIADNIRNLSSGAPNYYDDQRFG 146
              A        G PNY+  QRFG
Sbjct: 145 AIDARLQLIAQHGIPNYFGAQRFG 168