Pairwise Alignments

Query, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 167 a.a., tRNA pseudouridine(13) synthase (EC 5.4.99.27) from Variovorax sp. SCN45

 Score = 63.2 bits (152), Expect = 5e-15
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 2   KFRQKHEDFIVNEILEYELNDYGNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGL 61
           + R   EDF V E+  +  +  G + L  ++K G+    A   L++   V    IGY GL
Sbjct: 24  RIRSAPEDFRVEELPSFAASGSGEHLLLTVEKRGMNTAFAAKRLAQWAGVGEVAIGYAGL 83

Query: 62  KDRHAITTQYVS--IPKEYGK--LSLDEDNLKLEYVGTIEKPLKIGRLYGNRFEIIARAV 117
           KDRHA+T Q  S   PK        L+ D L++       K L  G L GNRF +  R V
Sbjct: 84  KDRHAVTVQRFSGHPPKRVAPDLALLESDELRVLEHHWHAKKLPRGALAGNRFVLALREV 143

Query: 118 DKDEFLKIADNIRNLSS-GAPNYY 140
           +  E  +I   ++ +S+ G PNY+
Sbjct: 144 E-GERDRIEQRLQEISAHGVPNYF 166