Pairwise Alignments

Query, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 354 a.a., Uncharacterized conserved protein from Kangiella aquimarina DSM 16071

 Score = 68.2 bits (165), Expect = 4e-16
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 3   FRQKHEDFIVNEILEYELNDYGNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGLK 62
           FRQ+  DF V+E L +E +  G + L  ++K  I        L +  EV T +IGY G K
Sbjct: 21  FRQQLSDFCVDEELRFEPSGEGAHHLLLIEKRNINTDIVCHKLRRFAEVNTTDIGYAGKK 80

Query: 63  DRHAITTQYVSIP----KEYGKLSLDEDNLKLEYVGTIEKPLKIGRLYGNRFEIIARAV- 117
           DR AI  Q+ S+     KE      ++D + +      +K L+IG +  N F+I  R + 
Sbjct: 81  DRFAIARQWFSVQLPLLKEIDWTEFNDDEVTVLKATRHDKKLRIGAVKQNHFKITLRDIG 140

Query: 118 -----DKDEFLKIADNIRNLSSGAPNYYDDQRFGSVFNGKFIAKEI 158
                DK+   +    I+    G  NY+ +QRFG   NG  +A+ +
Sbjct: 141 FKEGADKNSLEQRIAKIQ--QHGFANYFGEQRFGR--NGDNLARGV 182



 Score = 26.9 bits (58), Expect = 9e-04
 Identities = 9/23 (39%), Positives = 18/23 (78%)

Query: 366 IDLEFSLKKGSYATIILKRVFNI 388
           +++ FSL KG++AT +L+ +F +
Sbjct: 322 LEMRFSLPKGAFATSLLRELFEL 344