Pairwise Alignments

Query, 355 a.a., DNA cytosine methyltransferase from Methanococcus maripaludis S2

Subject, 471 a.a., DNA-methyltransferase (dcm) from Enterobacter asburiae PDN3

 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 87/399 (21%), Positives = 148/399 (37%), Gaps = 93/399 (23%)

Query: 3   FIDLFCGCGGFSRGFVEMGFKPLLAIELDENAANSYALNYNGTVFEKKLNDILEKDVYFK 62
           FIDLF G GG   GF  +G + +   E +++A  +Y  N+     E   N  +       
Sbjct: 88  FIDLFAGIGGIRHGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPHEHHFNADIR------ 141

Query: 63  LEDFLVQDDIEEFKKSNNYENLNPVVINEDIREINSKYITNKIKDTSYSKIDVIIGGPPC 122
                   D+    KS                 ++ ++    I+ T  +  DV++ G PC
Sbjct: 142 --------DVTLSHKSG----------------VSDEHAAEHIRQTIPAH-DVLLAGFPC 176

Query: 123 EGYT--GANPKRERSPFNRLYRDPVGRLVLDYIRIVGDISPEVFVMENVPGILNYETREN 180
           + ++  G + K      +    D  G L  D  RI+    P +FV+ENV  + +++  + 
Sbjct: 177 QPFSLAGVSKKNALGRAHGFACDTQGTLFFDVARIIDACRPAIFVLENVKNLKSHDGGKT 236

Query: 181 IEKEFSRAGYDELYFHVFDSENYGN------------PSFRKRVIILNIPLNLEKTDNVD 228
                     DEL + V DS++ G             P  R+R++++    +L      +
Sbjct: 237 F--RIIMQTLDELGYDVADSQDMGADDPKIIDGKHFLPQHRERIVLVGFRRDL------N 288

Query: 229 VKTALSNIDRNALNNEKYPLPEKIAKSIHKIKIGGSAVKFK----------------ACG 272
           +K   +  D  +L  E+ P    + + +   K   + V +K                  G
Sbjct: 289 LKGDFTLRDIPSLYPERRPTVADLLEPVVDAKFILTPVLWKYLYRYAKKHQAKGNGFGFG 348

Query: 273 GVLDNYIR----------------LSMEGNAETVMGKRRFIHPEED----RLLTVREQAR 312
            V  N  R                + ++   +  +G++ F  P       R LT RE AR
Sbjct: 349 MVNPNDPRSVTRTLSARYYKDGAEILIDRGWDKALGEKDFDDPHNQRHRPRRLTPRECAR 408

Query: 313 LMSY--PDTHIFAGGI--TAQYNQVGESVPPSLSLAIAK 347
           LM +  P  + F   +  T  Y Q G SV      A+AK
Sbjct: 409 LMGFETPQGYRFRIPVSDTQAYRQFGNSVVVPAFAAVAK 447