Pairwise Alignments

Query, 644 a.a., N-6 DNA methylase from Methanococcus maripaludis JJ

Subject, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

 Score = 75.9 bits (185), Expect = 4e-18
 Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 18/251 (7%)

Query: 291 NKIYKSIRYIQSSEDY-LGRFYGEFMSYSGGDGQTLGIVLTPKHITELFCDLVEVKPNDI 349
           NKI + + + ++ E +  G  Y + +      G   G   TP+ +TE    +V+ K  + 
Sbjct: 127 NKIQEGVDFNRAQERHEFGNLYEQLLRDLQNAGNA-GEFYTPRPVTEFMVRMVDPKLAEK 185

Query: 350 VFDPCCGTAGFLIASMHNMLKQTSKKSEQRNIRQNQLHGFELQPYMFTIATTNMILRGDG 409
           V DP CGT GFL  ++ +  ++  K +E     Q  + G E +P    +ATTNMIL G  
Sbjct: 186 VMDPACGTGGFLTCAIEHKRRRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIE 245

Query: 410 KSNLINEDFLKQDPNKIQLKQPTVG--MMNPPYSQGSKKD--PTLYEIAFTEH------- 458
             + I  D     P         V   + NPP+  G ++D   T +  AF          
Sbjct: 246 VPSQIRHDNTLSKPLISWGPSERVHCIVANPPFG-GMEEDGIETNFPAAFRTRETADLFL 304

Query: 459 --LLDSLTVGARCIVIIPQSSVTGKTREEQSIKENILKKHTLEGVITLNKDTFYG-VGVM 515
             ++  L  G R  V++P   + G+  + + IKE +L +  L  ++ L    F    G+ 
Sbjct: 305 VLIMQLLKDGGRAAVVLPDGFLFGEGIKSR-IKEKLLTECNLHTIVRLPNGVFNPYTGIK 363

Query: 516 PCIAIFTAGEP 526
             +  FT G P
Sbjct: 364 TNLLFFTKGTP 374