Pairwise Alignments

Query, 644 a.a., N-6 DNA methylase from Methanococcus maripaludis JJ

Subject, 502 a.a., Type I restriction enzyme EcoKI M protein from Alteromonas macleodii MIT1002

 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 25/236 (10%)

Query: 307 LGRFYGEFMSYSGGDGQT-LGIVLTPKHITELFCDLVEVKPNDIVFDPCCGTAGFLIAS- 364
           LG  Y   +  +  + ++  G   TP+ + +   +L+    +D+V DP  GT GF+IA+ 
Sbjct: 122 LGDMYEGLLEINASEKKSGAGQYFTPRVLIDAMVELMRPTLDDVVVDPTAGTGGFIIAAH 181

Query: 365 ----MHNMLKQTSKKSEQRNIRQNQLHGFELQPYMFTIATTNMILR----GDGKSNLINE 416
                HN +   S+ +  +  +     G EL P    +A  N++L      D  + ++  
Sbjct: 182 KYLEEHNDISSLSESAYDK-YQHKTFFGMELVPDTRRLAMMNLMLHDLAIDDDNAGVLYG 240

Query: 417 DFLKQDPNKIQLKQPTVGMMNPPY--SQG----SKKDPTLY----EIAFTEHLLDS-LTV 465
           D L  +     L + ++ + NPP+   QG    ++ D   Y    ++AF   +  + L  
Sbjct: 241 DTLSNEGK--ALPKASLILANPPFGTKQGGGIPTRDDLVHYTSNKQLAFLHAMYQTMLKP 298

Query: 466 GARCIVIIPQSSVTGKTREEQSIKENILKKHTLEGVITLNKDTFYGVGVMPCIAIF 521
           G R  V++P  +V  +    + I+ ++++K  L  V+ L    FY  GV   +  F
Sbjct: 299 GGRVAVVLP-DNVLFEGSTGRKIRNDLMEKCNLHTVLRLPTGIFYAAGVKTNVLFF 353