Pairwise Alignments

Query, 586 a.a., ATP synthase subunit A from Methanococcus maripaludis JJ

Subject, 460 a.a., F1 sector of membrane-bound ATP synthase, beta subunit from Escherichia coli BL21

 Score =  120 bits (302), Expect = 9e-32
 Identities = 114/450 (25%), Positives = 196/450 (43%), Gaps = 57/450 (12%)

Query: 61  GEGVEGTGAPLSVELGPGMLKAMYDGIQRPLNEIENATDSIYIPRGVSVPSISREIKWDF 120
           G+ V+  GA + VE     +  +YD +     E++N  + + +        + +++    
Sbjct: 4   GKIVQVIGAVVDVEFPQDAVPRVYDAL-----EVQNGNERLVL-------EVQQQLGGGI 51

Query: 121 EPTAAAGDEVITGDVIGTVQETASIVHKIMIPFGVS--GKIKEIKAGSFTVEETVAVVET 178
             T A G    + D +    +   + H I +P G +  G+I  +              E 
Sbjct: 52  VRTIAMG----SSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLG------------EP 95

Query: 179 AEGEKEIMMMQKWPVRKPRPSKGKQAPVIPLI-TGQRVEDTFFGLAKGGASAIPGPFGSG 237
            + + EI   ++W + +  PS  + +    L+ TG +V D     AKGG   + G  G G
Sbjct: 96  VDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVG 155

Query: 238 KTVTQHQLAKWSDVD---VVVYIGCGERGNEMTEVIEEFPHLDDIKTGNKLMDRTVLIAN 294
           KTV   +L +   ++     V+ G GER  E  +   E        T + ++D+  L+  
Sbjct: 156 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM-------TDSNVIDKVSLVYG 208

Query: 295 TSNMPVAAREASVYTGITIAEYFRDQGLGVLLTADSTSRWAEAMREISGRLEEMPGEEGY 354
             N P   R     TG+T+AE FRD+G  VLL  D+  R+  A  E+S  L  MP   GY
Sbjct: 209 QMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 268

Query: 355 PAYLSSKLAQFYERAGRVECLGSENKQGFVCIVGAVSPPGGDFSEPVTSNTLRIVKVFWA 414
              L+ ++    ER        +  K G +  V AV  P  D ++P  + T   +     
Sbjct: 269 QPTLAEEMGVLQERI-------TSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVV 321

Query: 415 LDANLARRRHFPAINWLTSYSLYIDD-IAGWWQQNTAADWRSLRDEAMSLLQKEAELQEI 473
           L   +A    +PA++ L S S  +D  + G    +TA           S+LQ+  EL++I
Sbjct: 322 LSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG-------VQSILQRYQELKDI 374

Query: 474 VQLVGPDALPDRERVILEIARMLREDFLQQ 503
           + ++G D L + +++++  AR ++  FL Q
Sbjct: 375 IAILGMDELSEEDKLVVARARKIQR-FLSQ 403