Pairwise Alignments

Query, 318 a.a., calcium/sodium antiporter from Methanococcus maripaludis JJ

Subject, 388 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  147 bits (370), Expect = 5e-40
 Identities = 96/320 (30%), Positives = 171/320 (53%), Gaps = 27/320 (8%)

Query: 5   SVLFLAAGLFMLSYGSDWFVLGASRVAKQFNISSFVIGATIVAFGTSLPEIVTSAYAAST 64
           +V+ L +GL +L  G++  V  A R+A++  +   +IG TIVA G+S P++  S  AA T
Sbjct: 35  NVIELLSGLVLLLIGAELMVRAAVRLAERLRVRPLIIGLTIVALGSSAPQMTVSLQAALT 94

Query: 65  GSVELAVGNALGSCIANIGLVLGLSLIISTVFIKNRSVLKNGYLYIIYTIIFTAIGYN-G 123
            + ++AVG+ +GS I NI + LGLS +I  + +  + V  +  L I  +++   + +N  
Sbjct: 95  DNPDIAVGSVVGSGIFNILVTLGLSALIIPLRVSRQLVRLDIPLMIGASLLVFILAWNKD 154

Query: 124 FSFFDGIFLLFLLLVYIIYTIKSGEMDDEEHEKSITFKK-----AIIYLLIGLLLVILGS 178
              FDG+ LL  L +Y+    +        H +  T  +     +++ +L GL +++   
Sbjct: 155 LGRFDGVLLLGALALYLGLLFRQSRHSTRPHTERPTETQQSWLISVLMILAGLAMLVFAG 214

Query: 179 SFFVDGAKGLASAFGVSEKIIGFTIVAFGTSLPELSVSFAAARQKLGGIVIGNVIGSNIA 238
              +  A  +A+  G+SE++IG T+VA GTSLPEL+ S  AA +    I +GNVIG+N+ 
Sbjct: 215 RLLLGAAVVVATDLGLSERVIGLTVVAVGTSLPELATSLIAALRGQRDIAVGNVIGANLF 274

Query: 239 NMFGALAIASIIHEIP------AVKFELSVNILMVLLLVAMMSKEKLKTLLKLNSTKEYL 292
           N+ G L + +++   P      A+ F+L V + +  L + +                   
Sbjct: 275 NLLGVLGLTALLAPTPLSVSPNALDFDLPVMLGVAALCLPVFYSG--------------- 319

Query: 293 SKITKADGLILILIYLLFVL 312
            ++T+A+GL+L+ +YL++ L
Sbjct: 320 YRVTRAEGLLLLGLYLVYGL 339