Pairwise Alignments

Query, 614 a.a., ATP-binding protein from Methanococcus maripaludis JJ

Subject, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis JJ

 Score =  249 bits (635), Expect = 4e-70
 Identities = 166/529 (31%), Positives = 276/529 (52%), Gaps = 17/529 (3%)

Query: 9   IGTKLLIFSIIIVLIPIVMMSYVSTDTISDLMTSNQESELDINLGILNERMDSVLVEFDT 68
           IGTKLLIFSII V+IPI ++  VS +TI+  M      +L+ +  + N  MDS   E  T
Sbjct: 8   IGTKLLIFSIITVIIPIAILGIVSNNTITQDMKEQSADKLESSNEMANTIMDSRFTELCT 67

Query: 69  MTAYTANLPVVVNAVKNNDKDTLQDFANGLEDQSWIDLAVFTDADGNVICASYGDDDAEI 128
           +  Y +    V  ++K  + D L+  A  L+  S  DL +FT   G+ I +S G+    +
Sbjct: 68  LAEYASYTQGVKTSIKTGNVDDLELRAETLKSASNADLVIFTGNGGSTIASSSGEG-ITL 126

Query: 129 SSYVKKLLEKNTIYAYDILPNEEASKYSDYELDGHD-ALTIFTVAPIYDGDSLIGAVTYV 187
            S + K+ + +    ++ +P + A K+SD ++ G D AL+I    PIYD    +G V ++
Sbjct: 127 DSTILKVSKSSEKSGFEKIPEQTALKFSDADVTGTDSALSIVVAYPIYDDAGTLGYVAFI 186

Query: 188 DIMNKDDYWVDRIKEVTGDEASIYLNNVRISTTCQKDGVDFVGELADEDIYETVSKKQ-D 246
           D++N D   VD IK  TGDE++++L N RIST+        VG  A + +Y TV K+  +
Sbjct: 187 DVLNNDHALVDSIKASTGDESTLFLENYRISTSVVSGNSRAVGTTASDVVYNTVVKENTE 246

Query: 247 VRSTVTINGVPYLAKYSPIYNIDGEVIGMTCVGTPKSPFTVLLNSVIQKIFFIAFSSLII 306
              +  + G  +L KY P+ + +G  IGM  VGTP++ FT ++N+       IA   L+I
Sbjct: 247 FMGSANVVGQSFLTKYVPLKDSNGATIGMLFVGTPEAQFTQMVNNARNNTIIIALFGLLI 306

Query: 307 AVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIRKS 366
           AV +++I ++ I   + +L++    FG GNYD   ++ TGDELE+LA+SFNKMA++I++ 
Sbjct: 307 AVVISLISSRSITKPLNQLEDGVHKFGSGNYDHTITVKTGDELEDLADSFNKMANDIKEL 366

Query: 367 DKKLKSDAHTLKTSFDELKEVDNLKSE---ILSIVSHELRTPLTAILGYVELLKDETAGK 423
              L +D  +L  +  E+ EV N  +E    +    +  R  L   + +      E   K
Sbjct: 367 HSILDADKLSLANTLKEIFEVMNHLAEGDFSIRADENRERNKLQKTINHA----IENVSK 422

Query: 424 LSEKQKEFISVIS----ENSDRLKRITDNMSDLVTVDNKILDIKRDKINLKKEVNDILRS 479
           + E  K  I+V+S    + S+ LKR  +    +    N++     D+    ++ +D L  
Sbjct: 423 MMENLKSEITVLSGELEDVSEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDDL-- 480

Query: 480 FDYFAESKNIVLLEDVDNLDIKGDKSKIHQVLSNLIENAIKFSKKQTKV 528
            +  A++ ++V  +   ++D   +     +     +ENAI   +K T V
Sbjct: 481 -EKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNV 528



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 300 AFSSLIIAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASID-----TGDELEELAE 354
           AF  +  +V  +  +  +I D+ K   N+ +   R N  + ASI      T +EL   +E
Sbjct: 640 AFMKIKESVETSAKMIAQIKDNAKNASNNTQEALR-NVQDIASISEEFAATAEELTASSE 698

Query: 355 SFNKMADEIRKSDKKLKSDAHTLKTSFDELK 385
             N+  +EI  S +++   +  L    DE K
Sbjct: 699 EQNRAVEEIDASAERMMDISRKLAEDADEFK 729